BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0988 (428 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 29 1.6 08_02_0012 - 11247424-11247702 27 4.9 07_01_1021 + 8736032-8736106,8736336-8736374,8737362-8737493,873... 27 4.9 06_01_0514 - 3706178-3706787,3709334-3709441,3710425-3710810 27 6.4 06_01_0513 - 3701148-3701757,3702654-3703228 27 6.4 01_01_0505 - 3695937-3695972,3696251-3696316,3696658-3696747,369... 27 6.4 >08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191, 5350375-5350589,5351123-5351393,5351986-5352161, 5352287-5352394,5352821-5352930,5354291-5354393, 5354658-5354828,5354952-5355080,5355322-5355504, 5355612-5355701,5355823-5355934,5356100-5356227, 5357769-5357825,5357872-5357923,5358318-5358393, 5358860-5358950,5359046-5359224,5359563-5359681, 5359783-5359880 Length = 1955 Score = 29.1 bits (62), Expect = 1.6 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%) Frame = +2 Query: 53 NTNGVRYRVPVSGSTTR---FHIAHATSSIASI 142 N NG Y +PVSGS + HI H +A I Sbjct: 1320 NRNGTDYHIPVSGSNAKEPPIHIVHIAVEMAPI 1352 >08_02_0012 - 11247424-11247702 Length = 92 Score = 27.5 bits (58), Expect = 4.9 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = -1 Query: 230 WKHGVVLVVRLWRTFGCSARWGKVGSTG*ECWQWRR 123 W VLV+ L F + R +V ++G W+WRR Sbjct: 37 WSGNGVLVLMLHLDFQAATRARRVTTSGHGGWRWRR 72 >07_01_1021 + 8736032-8736106,8736336-8736374,8737362-8737493, 8737848-8737892,8738450-8739157,8740679-8740807, 8741290-8741346,8742937-8742954 Length = 400 Score = 27.5 bits (58), Expect = 4.9 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = -2 Query: 238 STPGNMEWSSLFDCGGHLDALHGG 167 ST G W+ CGGH+ HGG Sbjct: 100 STDGASYWTFHQTCGGHIVGRHGG 123 >06_01_0514 - 3706178-3706787,3709334-3709441,3710425-3710810 Length = 367 Score = 27.1 bits (57), Expect = 6.4 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -2 Query: 253 GSSWYSTPGNMEWSSLFDCGGHLDALHGG 167 G++ YS W SL GGHL+ + GG Sbjct: 232 GTNSYSNNNFGGWQSLAFAGGHLEPVSGG 260 >06_01_0513 - 3701148-3701757,3702654-3703228 Length = 394 Score = 27.1 bits (57), Expect = 6.4 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -2 Query: 253 GSSWYSTPGNMEWSSLFDCGGHLDALHGG 167 G++ YS W SL GGHL+ + GG Sbjct: 259 GTNSYSNNNFGGWQSLAFAGGHLEPVSGG 287 >01_01_0505 - 3695937-3695972,3696251-3696316,3696658-3696747, 3696934-3697143,3697371-3697404,3697566-3697912 Length = 260 Score = 27.1 bits (57), Expect = 6.4 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%) Frame = -3 Query: 198 VEDIWMLCT--VG*GWQHWLRMLAMEEVACAIW-NLVVDPETGTLYRTPFVFLI*TIFF 31 +ED W C + GW R+++ +A + ++VVD + LY T + FL+ T++F Sbjct: 68 LEDCWKPCLEQIHPGWLLAFRVVSFFILASLLAVDVVVDGWSVFLYYTQWTFLLVTLYF 126 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,979,571 Number of Sequences: 37544 Number of extensions: 244194 Number of successful extensions: 700 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 686 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 700 length of database: 14,793,348 effective HSP length: 75 effective length of database: 11,977,548 effective search space used: 802495716 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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