Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0988
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535...    29   1.6  
08_02_0012 - 11247424-11247702                                         27   4.9  
07_01_1021 + 8736032-8736106,8736336-8736374,8737362-8737493,873...    27   4.9  
06_01_0514 - 3706178-3706787,3709334-3709441,3710425-3710810           27   6.4  
06_01_0513 - 3701148-3701757,3702654-3703228                           27   6.4  
01_01_0505 - 3695937-3695972,3696251-3696316,3696658-3696747,369...    27   6.4  

>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
            5350375-5350589,5351123-5351393,5351986-5352161,
            5352287-5352394,5352821-5352930,5354291-5354393,
            5354658-5354828,5354952-5355080,5355322-5355504,
            5355612-5355701,5355823-5355934,5356100-5356227,
            5357769-5357825,5357872-5357923,5358318-5358393,
            5358860-5358950,5359046-5359224,5359563-5359681,
            5359783-5359880
          Length = 1955

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = +2

Query: 53   NTNGVRYRVPVSGSTTR---FHIAHATSSIASI 142
            N NG  Y +PVSGS  +    HI H    +A I
Sbjct: 1320 NRNGTDYHIPVSGSNAKEPPIHIVHIAVEMAPI 1352


>08_02_0012 - 11247424-11247702
          Length = 92

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 230 WKHGVVLVVRLWRTFGCSARWGKVGSTG*ECWQWRR 123
           W    VLV+ L   F  + R  +V ++G   W+WRR
Sbjct: 37  WSGNGVLVLMLHLDFQAATRARRVTTSGHGGWRWRR 72


>07_01_1021 +
           8736032-8736106,8736336-8736374,8737362-8737493,
           8737848-8737892,8738450-8739157,8740679-8740807,
           8741290-8741346,8742937-8742954
          Length = 400

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 238 STPGNMEWSSLFDCGGHLDALHGG 167
           ST G   W+    CGGH+   HGG
Sbjct: 100 STDGASYWTFHQTCGGHIVGRHGG 123


>06_01_0514 - 3706178-3706787,3709334-3709441,3710425-3710810
          Length = 367

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 253 GSSWYSTPGNMEWSSLFDCGGHLDALHGG 167
           G++ YS      W SL   GGHL+ + GG
Sbjct: 232 GTNSYSNNNFGGWQSLAFAGGHLEPVSGG 260


>06_01_0513 - 3701148-3701757,3702654-3703228
          Length = 394

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 253 GSSWYSTPGNMEWSSLFDCGGHLDALHGG 167
           G++ YS      W SL   GGHL+ + GG
Sbjct: 259 GTNSYSNNNFGGWQSLAFAGGHLEPVSGG 287


>01_01_0505 -
           3695937-3695972,3696251-3696316,3696658-3696747,
           3696934-3697143,3697371-3697404,3697566-3697912
          Length = 260

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = -3

Query: 198 VEDIWMLCT--VG*GWQHWLRMLAMEEVACAIW-NLVVDPETGTLYRTPFVFLI*TIFF 31
           +ED W  C   +  GW    R+++   +A  +  ++VVD  +  LY T + FL+ T++F
Sbjct: 68  LEDCWKPCLEQIHPGWLLAFRVVSFFILASLLAVDVVVDGWSVFLYYTQWTFLLVTLYF 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,979,571
Number of Sequences: 37544
Number of extensions: 244194
Number of successful extensions: 700
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)