Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0988
         (428 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_9114| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.9  
SB_54239| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_54676| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_20824| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_14208| Best HMM Match : Img2 (HMM E-Value=8.6)                      27   5.0  

>SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1644

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 53   NTNGVRYRVPVSGSTTRFHIAHATSSIASILSQCCQPYPTVQSIQMSSTIEQRGPLHV 226
            N NG    +P +GS    H   + +S   +  Q C P+P ++ I+    I ++ P+ V
Sbjct: 852  NVNGELSYIPFNGSVLPNHETISWTSANILPRQACPPWP-LRGIEQMLGIYEKPPVEV 908


>SB_9114| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 53  NTNGVRYRVPVSGSTTRFHIAHATSSIASILSQCCQPYPTVQSIQMSSTIEQRGPLHV 226
           N NG    +P +GS    H   + +S   +  Q C P+P ++ I+    I ++ P+ V
Sbjct: 82  NMNGELLYIPFNGSVLPNHETISWTSANILHRQACPPWP-LRGIEQMLGIYEKPPVEV 138


>SB_54239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 53  NTNGVRYRVPVSGSTTRFHIAHATSSIASILSQCCQPYPTVQSIQMSSTIEQRGPLHV 226
           N NG    +P +GS    H   + +S   +  Q C P+P ++ I+    I ++ P+ V
Sbjct: 174 NMNGELSYIPFNGSVLPKHETISWTSANILPRQACPPWP-LRGIEQMLGIYEKPPVEV 230


>SB_54676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 926

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 89  GSTTRFHIAHATSSIASILSQCC 157
           G+TTR ++A    SI+S  S CC
Sbjct: 878 GTTTRIYVASLEISISSTSSSCC 900


>SB_20824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 17  HPFCVKKIV*IRNTNGVRYRVPVSGSTTRFHIAHAT 124
           H F  + +V +  T G R R PV  ST+    +HAT
Sbjct: 176 HRFPGRSVVPVPLTTGFRVRFPVPTSTSALPSSHAT 211


>SB_14208| Best HMM Match : Img2 (HMM E-Value=8.6)
          Length = 387

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 53  NTNGVRYRVPVSGSTTRFHIAHATSSIASILSQCCQPYPTVQSIQMSSTIEQRGPLHV 226
           N NG    +P +GS    H   + +S   +  Q C P+P ++ I+    I ++ P+ V
Sbjct: 82  NVNGELSYIPFNGSVLPNHETISWTSANILPRQACPPWP-LRDIKQMLGIYKKPPVEV 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,927,040
Number of Sequences: 59808
Number of extensions: 282837
Number of successful extensions: 682
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)