Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0988
         (428 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U94836-1|AAB53327.1|  884|Homo sapiens ERPROT 213-21 protein.          30   2.9  
BC021294-1|AAH21294.1|  884|Homo sapiens calcium homeostasis end...    30   2.9  
AF536542-1|AAN77183.1|  916|Homo sapiens SR-related CTD associat...    30   2.9  
AB209730-1|BAD92967.1|  399|Homo sapiens calcium homeostasis end...    30   2.9  
AY028897-1|AAK30022.1| 1642|Homo sapiens ATP-binding cassette A5...    30   3.8  
AK056533-1|BAB71208.1|  865|Homo sapiens protein ( Homo sapiens ...    30   3.8  
AJ275973-1|CAB93535.3| 1642|Homo sapiens ATP-binding cassette pr...    30   3.8  
AB067475-1|BAB67781.1|  737|Homo sapiens KIAA1888 protein protein.     30   3.8  

>U94836-1|AAB53327.1|  884|Homo sapiens ERPROT 213-21 protein.
          Length = 884

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 168 PPCRASKCPPQSNNEDHSMFPGVEYHELP 254
           PP    + PP  N++D S+ P V Y +LP
Sbjct: 591 PPHMRRQGPPHINHDDPSLVPNVPYFDLP 619


>BC021294-1|AAH21294.1|  884|Homo sapiens calcium homeostasis
           endoplasmic reticulum protein protein.
          Length = 884

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 168 PPCRASKCPPQSNNEDHSMFPGVEYHELP 254
           PP    + PP  N++D S+ P V Y +LP
Sbjct: 591 PPHMRRQGPPHINHDDPSLVPNVPYFDLP 619


>AF536542-1|AAN77183.1|  916|Homo sapiens SR-related CTD associated
           factor 6 protein.
          Length = 916

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 168 PPCRASKCPPQSNNEDHSMFPGVEYHELP 254
           PP    + PP  N++D S+ P V Y +LP
Sbjct: 623 PPHMRRQGPPHINHDDPSLVPNVPYFDLP 651


>AB209730-1|BAD92967.1|  399|Homo sapiens calcium homeostasis
           endoplasmic reticulum protein variant protein.
          Length = 399

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 168 PPCRASKCPPQSNNEDHSMFPGVEYHELP 254
           PP    + PP  N++D S+ P V Y +LP
Sbjct: 106 PPHMRRQGPPHINHDDPSLVPNVPYFDLP 134


>AY028897-1|AAK30022.1| 1642|Homo sapiens ATP-binding cassette A5
            protein.
          Length = 1642

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = -3

Query: 285  IINLISSYHVWAVHGTQLLETWSGPRCSIVEDI 187
            ++N+IS+Y+++ ++ T+ ++ WS P    + DI
Sbjct: 983  LVNIISNYYLYHLNVTETIQIWSTPFFQEITDI 1015


>AK056533-1|BAB71208.1|  865|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31971 fis, clone NT2RP7008137, weakly similar to
           ATP-BINDING CASSETTE, SUB-FAMILY A, MEMBER 1. ).
          Length = 865

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = -3

Query: 285 IINLISSYHVWAVHGTQLLETWSGPRCSIVEDI 187
           ++N+IS+Y+++ ++ T+ ++ WS P    + DI
Sbjct: 206 LVNIISNYYLYHLNVTETIQIWSTPFFQEITDI 238


>AJ275973-1|CAB93535.3| 1642|Homo sapiens ATP-binding cassette protein
            protein.
          Length = 1642

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = -3

Query: 285  IINLISSYHVWAVHGTQLLETWSGPRCSIVEDI 187
            ++N+IS+Y+++ ++ T+ ++ WS P    + DI
Sbjct: 983  LVNIISNYYLYHLNVTETIQIWSTPFFQEITDI 1015


>AB067475-1|BAB67781.1|  737|Homo sapiens KIAA1888 protein protein.
          Length = 737

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = -3

Query: 285 IINLISSYHVWAVHGTQLLETWSGPRCSIVEDI 187
           ++N+IS+Y+++ ++ T+ ++ WS P    + DI
Sbjct: 78  LVNIISNYYLYHLNVTETIQIWSTPFFQEITDI 110


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,642,215
Number of Sequences: 237096
Number of extensions: 1464303
Number of successful extensions: 2851
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2850
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3373625546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)