SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0988
         (428 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ352451-1|ABD22987.1| 3790|Drosophila melanogaster Nipped-A pro...    29   2.0  
AY142217-1|AAN52145.1| 3803|Drosophila melanogaster transformati...    29   2.0  
AE013599-60|AAF57342.2| 3805|Drosophila melanogaster CG33554-PA,...    29   2.0  
AE013599-59|ABI31023.1| 3628|Drosophila melanogaster CG33554-PC,...    29   2.0  
AE013599-58|ABI31022.1| 3400|Drosophila melanogaster CG33554-PB,...    29   2.0  
BT022701-1|AAY55117.1|  157|Drosophila melanogaster IP07196p pro...    28   4.6  
AE014297-1019|AAN13441.1|  157|Drosophila melanogaster CG31415-P...    28   4.6  
BT003470-1|AAO39473.1|  506|Drosophila melanogaster RE70685p pro...    28   6.1  
AE014134-789|AAF50967.3|  790|Drosophila melanogaster CG31660-PB...    28   6.1  
AE014134-788|AAX52647.1|  944|Drosophila melanogaster CG31660-PC...    28   6.1  
AY129451-1|AAM76193.1|  787|Drosophila melanogaster RE01517p pro...    27   8.1  
AE014298-1891|AAF48260.1|  787|Drosophila melanogaster CG10617-P...    27   8.1  

>DQ352451-1|ABD22987.1| 3790|Drosophila melanogaster Nipped-A protein.
          Length = 3790

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 159  WQHWLRMLAMEEVACAIWNLV 97
            WQ++L  L+ E+V C +W+L+
Sbjct: 1604 WQNYLSTLSSEDVLCDLWHLI 1624


>AY142217-1|AAN52145.1| 3803|Drosophila melanogaster
            transformation/transcription domain-associated protein
            protein.
          Length = 3803

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 159  WQHWLRMLAMEEVACAIWNLV 97
            WQ++L  L+ E+V C +W+L+
Sbjct: 1666 WQNYLSTLSSEDVLCDLWHLI 1686


>AE013599-60|AAF57342.2| 3805|Drosophila melanogaster CG33554-PA,
            isoform A protein.
          Length = 3805

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 159  WQHWLRMLAMEEVACAIWNLV 97
            WQ++L  L+ E+V C +W+L+
Sbjct: 1668 WQNYLSTLSSEDVLCDLWHLI 1688


>AE013599-59|ABI31023.1| 3628|Drosophila melanogaster CG33554-PC,
            isoform C protein.
          Length = 3628

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 159  WQHWLRMLAMEEVACAIWNLV 97
            WQ++L  L+ E+V C +W+L+
Sbjct: 1512 WQNYLSTLSSEDVLCDLWHLI 1532


>AE013599-58|ABI31022.1| 3400|Drosophila melanogaster CG33554-PB,
            isoform B protein.
          Length = 3400

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 159  WQHWLRMLAMEEVACAIWNLV 97
            WQ++L  L+ E+V C +W+L+
Sbjct: 1342 WQNYLSTLSSEDVLCDLWHLI 1362


>BT022701-1|AAY55117.1|  157|Drosophila melanogaster IP07196p
           protein.
          Length = 157

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 171 PCRASKCPPQSNNEDHSMFPG 233
           PC     PPQSNN D    PG
Sbjct: 5   PCSGRSLPPQSNNPDSCPAPG 25


>AE014297-1019|AAN13441.1|  157|Drosophila melanogaster CG31415-PA
           protein.
          Length = 157

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 171 PCRASKCPPQSNNEDHSMFPG 233
           PC     PPQSNN D    PG
Sbjct: 5   PCSGRSLPPQSNNPDSCPAPG 25


>BT003470-1|AAO39473.1|  506|Drosophila melanogaster RE70685p
           protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -2

Query: 256 LGSSWYSTPGNMEWSSLF-DC 197
           LG++W ST G  EW + F DC
Sbjct: 375 LGAAWNSTDGTQEWGAPFRDC 395


>AE014134-789|AAF50967.3|  790|Drosophila melanogaster CG31660-PB,
           isoform B protein.
          Length = 790

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -2

Query: 256 LGSSWYSTPGNMEWSSLF-DC 197
           LG++W ST G  EW + F DC
Sbjct: 375 LGAAWNSTDGTQEWGAPFRDC 395


>AE014134-788|AAX52647.1|  944|Drosophila melanogaster CG31660-PC,
           isoform C protein.
          Length = 944

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -2

Query: 256 LGSSWYSTPGNMEWSSLF-DC 197
           LG++W ST G  EW + F DC
Sbjct: 375 LGAAWNSTDGTQEWGAPFRDC 395


>AY129451-1|AAM76193.1|  787|Drosophila melanogaster RE01517p
           protein.
          Length = 787

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 177 CTVG*GWQHWLRMLAMEEVACAIWNLV 97
           C VG G +HW +ML+      A+W+++
Sbjct: 726 CAVGKGLRHWHQMLSSLRKPVAMWHVL 752


>AE014298-1891|AAF48260.1|  787|Drosophila melanogaster CG10617-PA
           protein.
          Length = 787

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 177 CTVG*GWQHWLRMLAMEEVACAIWNLV 97
           C VG G +HW +ML+      A+W+++
Sbjct: 726 CAVGKGLRHWHQMLSSLRKPVAMWHVL 752


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,828,526
Number of Sequences: 53049
Number of extensions: 405982
Number of successful extensions: 1125
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1334434944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -