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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0988
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical pr...    30   0.61 
Z83317-1|CAB05898.1|  510|Caenorhabditis elegans Hypothetical pr...    26   10.0 
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr...    26   10.0 
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr...    26   10.0 
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr...    26   10.0 
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr...    26   10.0 
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr...    26   10.0 
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr...    26   10.0 
U80843-18|AAN63439.1|  289|Caenorhabditis elegans Hypothetical p...    26   10.0 
U80843-17|AAK71358.1|  444|Caenorhabditis elegans Hypothetical p...    26   10.0 
AF036695-3|ABD63231.1|  193|Caenorhabditis elegans Hypothetical ...    26   10.0 

>U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical
           protein M03A1.3 protein.
          Length = 669

 Score = 30.3 bits (65), Expect = 0.61
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -1

Query: 221 GVVLVVRLWRTFGCSARWGKVGSTG*ECWQWRRWHVQYG 105
           GV  +V        S  W   G TG E W W +WH  +G
Sbjct: 487 GVCCIVTSILCILISTNWTWKG-TGSEAWYWTQWHTDFG 524


>Z83317-1|CAB05898.1|  510|Caenorhabditis elegans Hypothetical
           protein F13G11.1a protein.
          Length = 510

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = +1

Query: 85  LWVHHQIPYCTCHLLHCQHS*PVLPTLPHRAEHPNVLHNRTTRTTPCFQELST 243
           +W+++Q     C   HC+ S  ++ T+    EH +  H      +P  Q++ +
Sbjct: 23  VWLNNQKKILFCGAGHCKMSPHIIATVTIDDEHHHHHHRSNENYSPSSQDMDS 75


>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical
           protein ZK270.2e protein.
          Length = 4541

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 186 KCPPQSNNEDHSMFPGVE 239
           K PP SN  DH+ F G E
Sbjct: 813 KIPPSSNKTDHASFEGQE 830


>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical
           protein ZK270.2d protein.
          Length = 4648

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 186 KCPPQSNNEDHSMFPGVE 239
           K PP SN  DH+ F G E
Sbjct: 802 KIPPSSNKTDHASFEGQE 819


>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical
           protein ZK270.2a protein.
          Length = 4530

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 186 KCPPQSNNEDHSMFPGVE 239
           K PP SN  DH+ F G E
Sbjct: 802 KIPPSSNKTDHASFEGQE 819


>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical
           protein ZK270.2e protein.
          Length = 4541

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 186 KCPPQSNNEDHSMFPGVE 239
           K PP SN  DH+ F G E
Sbjct: 813 KIPPSSNKTDHASFEGQE 830


>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical
           protein ZK270.2d protein.
          Length = 4648

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 186 KCPPQSNNEDHSMFPGVE 239
           K PP SN  DH+ F G E
Sbjct: 802 KIPPSSNKTDHASFEGQE 819


>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical
           protein ZK270.2a protein.
          Length = 4530

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 186 KCPPQSNNEDHSMFPGVE 239
           K PP SN  DH+ F G E
Sbjct: 802 KIPPSSNKTDHASFEGQE 819


>U80843-18|AAN63439.1|  289|Caenorhabditis elegans Hypothetical
           protein C32B5.1b protein.
          Length = 289

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 303 NFRSQQIINLISSY-HVWAVHGTQLLETWSGPRCSIVEDIW 184
           +F S+++I LI  +  +    GT+    WS  R +   DIW
Sbjct: 233 SFISEKLIKLIDHWLDIGKEVGTRFSFVWSATRMNAARDIW 273


>U80843-17|AAK71358.1|  444|Caenorhabditis elegans Hypothetical
           protein C32B5.1a protein.
          Length = 444

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 303 NFRSQQIINLISSY-HVWAVHGTQLLETWSGPRCSIVEDIW 184
           +F S+++I LI  +  +    GT+    WS  R +   DIW
Sbjct: 349 SFISEKLIKLIDHWLDIGKEVGTRFSFVWSATRMNAARDIW 389


>AF036695-3|ABD63231.1|  193|Caenorhabditis elegans Hypothetical
          protein F16B3.3 protein.
          Length = 193

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -2

Query: 67 HAI-CISNLNDFFYTKWMHFTL 5
          HAI C S  NDF   +W HF L
Sbjct: 27 HAIKCYSCANDFIVWQWRHFFL 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,326,474
Number of Sequences: 27780
Number of extensions: 210250
Number of successful extensions: 495
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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