Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0988
(428 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U49956-1|AAO38615.1| 669|Caenorhabditis elegans Hypothetical pr... 30 0.61
Z83317-1|CAB05898.1| 510|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr... 26 10.0
U80843-18|AAN63439.1| 289|Caenorhabditis elegans Hypothetical p... 26 10.0
U80843-17|AAK71358.1| 444|Caenorhabditis elegans Hypothetical p... 26 10.0
AF036695-3|ABD63231.1| 193|Caenorhabditis elegans Hypothetical ... 26 10.0
>U49956-1|AAO38615.1| 669|Caenorhabditis elegans Hypothetical
protein M03A1.3 protein.
Length = 669
Score = 30.3 bits (65), Expect = 0.61
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -1
Query: 221 GVVLVVRLWRTFGCSARWGKVGSTG*ECWQWRRWHVQYG 105
GV +V S W G TG E W W +WH +G
Sbjct: 487 GVCCIVTSILCILISTNWTWKG-TGSEAWYWTQWHTDFG 524
>Z83317-1|CAB05898.1| 510|Caenorhabditis elegans Hypothetical
protein F13G11.1a protein.
Length = 510
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +1
Query: 85 LWVHHQIPYCTCHLLHCQHS*PVLPTLPHRAEHPNVLHNRTTRTTPCFQELST 243
+W+++Q C HC+ S ++ T+ EH + H +P Q++ +
Sbjct: 23 VWLNNQKKILFCGAGHCKMSPHIIATVTIDDEHHHHHHRSNENYSPSSQDMDS 75
>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical
protein ZK270.2e protein.
Length = 4541
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 186 KCPPQSNNEDHSMFPGVE 239
K PP SN DH+ F G E
Sbjct: 813 KIPPSSNKTDHASFEGQE 830
>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical
protein ZK270.2d protein.
Length = 4648
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 186 KCPPQSNNEDHSMFPGVE 239
K PP SN DH+ F G E
Sbjct: 802 KIPPSSNKTDHASFEGQE 819
>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical
protein ZK270.2a protein.
Length = 4530
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 186 KCPPQSNNEDHSMFPGVE 239
K PP SN DH+ F G E
Sbjct: 802 KIPPSSNKTDHASFEGQE 819
>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical
protein ZK270.2e protein.
Length = 4541
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 186 KCPPQSNNEDHSMFPGVE 239
K PP SN DH+ F G E
Sbjct: 813 KIPPSSNKTDHASFEGQE 830
>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical
protein ZK270.2d protein.
Length = 4648
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 186 KCPPQSNNEDHSMFPGVE 239
K PP SN DH+ F G E
Sbjct: 802 KIPPSSNKTDHASFEGQE 819
>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical
protein ZK270.2a protein.
Length = 4530
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 186 KCPPQSNNEDHSMFPGVE 239
K PP SN DH+ F G E
Sbjct: 802 KIPPSSNKTDHASFEGQE 819
>U80843-18|AAN63439.1| 289|Caenorhabditis elegans Hypothetical
protein C32B5.1b protein.
Length = 289
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 303 NFRSQQIINLISSY-HVWAVHGTQLLETWSGPRCSIVEDIW 184
+F S+++I LI + + GT+ WS R + DIW
Sbjct: 233 SFISEKLIKLIDHWLDIGKEVGTRFSFVWSATRMNAARDIW 273
>U80843-17|AAK71358.1| 444|Caenorhabditis elegans Hypothetical
protein C32B5.1a protein.
Length = 444
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 303 NFRSQQIINLISSY-HVWAVHGTQLLETWSGPRCSIVEDIW 184
+F S+++I LI + + GT+ WS R + DIW
Sbjct: 349 SFISEKLIKLIDHWLDIGKEVGTRFSFVWSATRMNAARDIW 389
>AF036695-3|ABD63231.1| 193|Caenorhabditis elegans Hypothetical
protein F16B3.3 protein.
Length = 193
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -2
Query: 67 HAI-CISNLNDFFYTKWMHFTL 5
HAI C S NDF +W HF L
Sbjct: 27 HAIKCYSCANDFIVWQWRHFFL 48
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,326,474
Number of Sequences: 27780
Number of extensions: 210250
Number of successful extensions: 495
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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