BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0988 (428 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U49956-1|AAO38615.1| 669|Caenorhabditis elegans Hypothetical pr... 30 0.61 Z83317-1|CAB05898.1| 510|Caenorhabditis elegans Hypothetical pr... 26 10.0 Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr... 26 10.0 Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr... 26 10.0 Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr... 26 10.0 Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr... 26 10.0 Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr... 26 10.0 Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr... 26 10.0 U80843-18|AAN63439.1| 289|Caenorhabditis elegans Hypothetical p... 26 10.0 U80843-17|AAK71358.1| 444|Caenorhabditis elegans Hypothetical p... 26 10.0 AF036695-3|ABD63231.1| 193|Caenorhabditis elegans Hypothetical ... 26 10.0 >U49956-1|AAO38615.1| 669|Caenorhabditis elegans Hypothetical protein M03A1.3 protein. Length = 669 Score = 30.3 bits (65), Expect = 0.61 Identities = 14/39 (35%), Positives = 17/39 (43%) Frame = -1 Query: 221 GVVLVVRLWRTFGCSARWGKVGSTG*ECWQWRRWHVQYG 105 GV +V S W G TG E W W +WH +G Sbjct: 487 GVCCIVTSILCILISTNWTWKG-TGSEAWYWTQWHTDFG 524 >Z83317-1|CAB05898.1| 510|Caenorhabditis elegans Hypothetical protein F13G11.1a protein. Length = 510 Score = 26.2 bits (55), Expect = 10.0 Identities = 12/53 (22%), Positives = 25/53 (47%) Frame = +1 Query: 85 LWVHHQIPYCTCHLLHCQHS*PVLPTLPHRAEHPNVLHNRTTRTTPCFQELST 243 +W+++Q C HC+ S ++ T+ EH + H +P Q++ + Sbjct: 23 VWLNNQKKILFCGAGHCKMSPHIIATVTIDDEHHHHHHRSNENYSPSSQDMDS 75 >Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical protein ZK270.2e protein. Length = 4541 Score = 26.2 bits (55), Expect = 10.0 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = +3 Query: 186 KCPPQSNNEDHSMFPGVE 239 K PP SN DH+ F G E Sbjct: 813 KIPPSSNKTDHASFEGQE 830 >Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein ZK270.2d protein. Length = 4648 Score = 26.2 bits (55), Expect = 10.0 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = +3 Query: 186 KCPPQSNNEDHSMFPGVE 239 K PP SN DH+ F G E Sbjct: 802 KIPPSSNKTDHASFEGQE 819 >Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical protein ZK270.2a protein. Length = 4530 Score = 26.2 bits (55), Expect = 10.0 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = +3 Query: 186 KCPPQSNNEDHSMFPGVE 239 K PP SN DH+ F G E Sbjct: 802 KIPPSSNKTDHASFEGQE 819 >Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical protein ZK270.2e protein. Length = 4541 Score = 26.2 bits (55), Expect = 10.0 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = +3 Query: 186 KCPPQSNNEDHSMFPGVE 239 K PP SN DH+ F G E Sbjct: 813 KIPPSSNKTDHASFEGQE 830 >Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein ZK270.2d protein. Length = 4648 Score = 26.2 bits (55), Expect = 10.0 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = +3 Query: 186 KCPPQSNNEDHSMFPGVE 239 K PP SN DH+ F G E Sbjct: 802 KIPPSSNKTDHASFEGQE 819 >Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical protein ZK270.2a protein. Length = 4530 Score = 26.2 bits (55), Expect = 10.0 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = +3 Query: 186 KCPPQSNNEDHSMFPGVE 239 K PP SN DH+ F G E Sbjct: 802 KIPPSSNKTDHASFEGQE 819 >U80843-18|AAN63439.1| 289|Caenorhabditis elegans Hypothetical protein C32B5.1b protein. Length = 289 Score = 26.2 bits (55), Expect = 10.0 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = -3 Query: 303 NFRSQQIINLISSY-HVWAVHGTQLLETWSGPRCSIVEDIW 184 +F S+++I LI + + GT+ WS R + DIW Sbjct: 233 SFISEKLIKLIDHWLDIGKEVGTRFSFVWSATRMNAARDIW 273 >U80843-17|AAK71358.1| 444|Caenorhabditis elegans Hypothetical protein C32B5.1a protein. Length = 444 Score = 26.2 bits (55), Expect = 10.0 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = -3 Query: 303 NFRSQQIINLISSY-HVWAVHGTQLLETWSGPRCSIVEDIW 184 +F S+++I LI + + GT+ WS R + DIW Sbjct: 349 SFISEKLIKLIDHWLDIGKEVGTRFSFVWSATRMNAARDIW 389 >AF036695-3|ABD63231.1| 193|Caenorhabditis elegans Hypothetical protein F16B3.3 protein. Length = 193 Score = 26.2 bits (55), Expect = 10.0 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%) Frame = -2 Query: 67 HAI-CISNLNDFFYTKWMHFTL 5 HAI C S NDF +W HF L Sbjct: 27 HAIKCYSCANDFIVWQWRHFFL 48 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,326,474 Number of Sequences: 27780 Number of extensions: 210250 Number of successful extensions: 495 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 479 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 495 length of database: 12,740,198 effective HSP length: 75 effective length of database: 10,656,698 effective search space used: 713998766 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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