BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0988 (428 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex det... 22 2.5 AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 22 2.5 U15955-1|AAA67443.1| 95|Apis mellifera defensin precursor prot... 22 3.3 AY496432-1|AAS75803.1| 95|Apis mellifera defensin/royalisin pr... 22 3.3 AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 21 4.4 DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 21 5.8 AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 21 5.8 DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 21 7.7 DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 21 7.7 >DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex determiner protein. Length = 178 Score = 22.2 bits (45), Expect = 2.5 Identities = 7/19 (36%), Positives = 13/19 (68%) Frame = +2 Query: 326 FDQSSNFSSHNKPLVXKNY 382 + +N++++NK L KNY Sbjct: 91 YSNYNNYNNYNKKLYYKNY 109 >AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex determiner protein. Length = 419 Score = 22.2 bits (45), Expect = 2.5 Identities = 7/16 (43%), Positives = 13/16 (81%) Frame = +2 Query: 335 SSNFSSHNKPLVXKNY 382 ++N++++NK L KNY Sbjct: 335 NNNYNNYNKKLYYKNY 350 >U15955-1|AAA67443.1| 95|Apis mellifera defensin precursor protein. Length = 95 Score = 21.8 bits (44), Expect = 3.3 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%) Frame = +3 Query: 39 SFKLEIQ-MACGTECLSLG 92 SFK ++ AC CLSLG Sbjct: 50 SFKGQVNDSACAANCLSLG 68 >AY496432-1|AAS75803.1| 95|Apis mellifera defensin/royalisin precursor protein. Length = 95 Score = 21.8 bits (44), Expect = 3.3 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%) Frame = +3 Query: 39 SFKLEIQ-MACGTECLSLG 92 SFK ++ AC CLSLG Sbjct: 50 SFKGQVNDSACAANCLSLG 68 >AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex determiner protein. Length = 413 Score = 21.4 bits (43), Expect = 4.4 Identities = 7/14 (50%), Positives = 11/14 (78%) Frame = +2 Query: 341 NFSSHNKPLVXKNY 382 N++++NK L KNY Sbjct: 332 NYNNYNKKLYYKNY 345 >DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. Length = 828 Score = 21.0 bits (42), Expect = 5.8 Identities = 7/19 (36%), Positives = 11/19 (57%) Frame = -2 Query: 73 VPHAICISNLNDFFYTKWM 17 +P I L+ FF+ KW+ Sbjct: 637 IPSHIMAGLLDKFFFPKWL 655 >AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein protein. Length = 1308 Score = 21.0 bits (42), Expect = 5.8 Identities = 11/33 (33%), Positives = 14/33 (42%) Frame = +2 Query: 11 KVHPFCVKKIV*IRNTNGVRYRVPVSGSTTRFH 109 KV P V++ R +RY P T R H Sbjct: 586 KVRPSTVEEREEFRRQERMRYAAPHKAFTYRMH 618 >DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated ion channel subunit protein. Length = 469 Score = 20.6 bits (41), Expect = 7.7 Identities = 6/17 (35%), Positives = 10/17 (58%) Frame = -1 Query: 245 MVLNSWKHGVVLVVRLW 195 ++ SW H V+ +V W Sbjct: 158 LIFESWTHNVLDMVLYW 174 >DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex determiner protein. Length = 183 Score = 20.6 bits (41), Expect = 7.7 Identities = 9/33 (27%), Positives = 15/33 (45%) Frame = +2 Query: 293 DRKLQINIVRGFDQSSNFSSHNKPLVXKNYXGY 391 +R + IV + N+S++N NY Y Sbjct: 74 ERSKEPKIVSSLSNNYNYSNYNNYNNNNNYNNY 106 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 125,089 Number of Sequences: 438 Number of extensions: 2698 Number of successful extensions: 18 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 18 length of database: 146,343 effective HSP length: 52 effective length of database: 123,567 effective search space used: 11121030 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.2 bits)
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