Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0988
         (428 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   2.5  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   2.5  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   3.3  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   3.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   4.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   5.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.7  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   7.7  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 326 FDQSSNFSSHNKPLVXKNY 382
           +   +N++++NK L  KNY
Sbjct: 91  YSNYNNYNNYNKKLYYKNY 109


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 335 SSNFSSHNKPLVXKNY 382
           ++N++++NK L  KNY
Sbjct: 335 NNNYNNYNKKLYYKNY 350


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +3

Query: 39  SFKLEIQ-MACGTECLSLG 92
           SFK ++   AC   CLSLG
Sbjct: 50  SFKGQVNDSACAANCLSLG 68


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +3

Query: 39  SFKLEIQ-MACGTECLSLG 92
           SFK ++   AC   CLSLG
Sbjct: 50  SFKGQVNDSACAANCLSLG 68


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 341 NFSSHNKPLVXKNY 382
           N++++NK L  KNY
Sbjct: 332 NYNNYNKKLYYKNY 345


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 73  VPHAICISNLNDFFYTKWM 17
           +P  I    L+ FF+ KW+
Sbjct: 637 IPSHIMAGLLDKFFFPKWL 655


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +2

Query: 11  KVHPFCVKKIV*IRNTNGVRYRVPVSGSTTRFH 109
           KV P  V++    R    +RY  P    T R H
Sbjct: 586 KVRPSTVEEREEFRRQERMRYAAPHKAFTYRMH 618


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 245 MVLNSWKHGVVLVVRLW 195
           ++  SW H V+ +V  W
Sbjct: 158 LIFESWTHNVLDMVLYW 174


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +2

Query: 293 DRKLQINIVRGFDQSSNFSSHNKPLVXKNYXGY 391
           +R  +  IV     + N+S++N      NY  Y
Sbjct: 74  ERSKEPKIVSSLSNNYNYSNYNNYNNNNNYNNY 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,089
Number of Sequences: 438
Number of extensions: 2698
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)