Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0988
         (428 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30630.1 68415.m03732 expressed protein similar to H1-1flk [A...    29   1.8  
At5g14890.1 68418.m01746 NHL repeat-containing protein contains ...    28   3.1  
At5g17880.1 68418.m02097 disease resistance protein (TIR-NBS-LRR...    27   4.1  
At4g15230.1 68417.m02333 ABC transporter family protein similar ...    27   5.4  
At1g23180.1 68414.m02896 armadillo/beta-catenin repeat family pr...    27   5.4  
At1g35330.1 68414.m04379 zinc finger (C3HC4-type RING finger) fa...    27   7.1  
At1g06750.1 68414.m00717 hypothetical protein                          27   7.1  

>At2g30630.1 68415.m03732 expressed protein similar to H1-1flk
           [Arabidopsis thaliana] GI:388260
          Length = 531

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 104 FHIAHATSSIASILSQCCQPYPTVQSIQMSSTIEQR 211
           +H +HA   I+ ILS   +P   ++ I M++T EQR
Sbjct: 143 YHWSHADLMISQILSADVEPKKKLKHIVMAATREQR 178


>At5g14890.1 68418.m01746 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 754

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 271 FVLPCLGSSWYSTPGNMEW 215
           F+LPCLGSS  S P    W
Sbjct: 612 FILPCLGSSQPSGPNGSVW 630


>At5g17880.1 68418.m02097 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1197

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 168 PPCRASKCPPQSNNEDHSMFPGVE 239
           PP + S  PPQ + + H  F G+E
Sbjct: 185 PPSKCSALPPQRHQKRHETFWGIE 208


>At4g15230.1 68417.m02333 ABC transporter family protein similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, PDR5-like ABC transporter
            [Spirodela polyrhiza] GI:1514643; contains Pfam profile
            PF00005: ABC transporter
          Length = 1326

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 424  YVLFWAMTSILISXIIFXHEGFIV 353
            Y +FW++ SI  S +IF + G ++
Sbjct: 1183 YKMFWSLYSIFCSLLIFNYSGMLM 1206


>At1g23180.1 68414.m02896 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 834

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 147 LRMLAMEEVACAIWNLVVDPE 85
           L  +  E+  CA+WNL VD E
Sbjct: 202 LATVVKEQCICALWNLTVDEE 222


>At1g35330.1 68414.m04379 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 327

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 168 PPCRASKCPPQSNNEDHSMFPGVEYHE 248
           P CRAS  PP+  ++ +S++P +  H+
Sbjct: 167 PVCRAS-LPPKPGSDQNSLYPFIRPHD 192


>At1g06750.1 68414.m00717 hypothetical protein
          Length = 495

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 104 FHIAHATSSIASILSQCCQPYPTVQSIQMSSTIEQR 211
           FH +HA   I  +LS   +P   ++ I M++T E R
Sbjct: 105 FHWSHADLMITQVLSADAEPKRKLKQIVMAATRELR 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,667,557
Number of Sequences: 28952
Number of extensions: 196205
Number of successful extensions: 433
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)