Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0984
         (433 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    23   1.2  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    21   5.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   5.0  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    20   8.8  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    20   8.8  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    20   8.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    20   8.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    20   8.8  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 426 PNTSIASFNLLCFMYCLIKSAYCLVVNFL 340
           P   +++FN++ +MY LI      ++N +
Sbjct: 39  PRIVVSTFNIVFYMYTLILEERFKLINLI 67


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 194 FRTEHNQLVYLDDPD 238
           +R E NQLV   DPD
Sbjct: 107 YRNEWNQLVAKYDPD 121


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 134  SFFSTSIIQNNQSKYSKHTE 193
            S F   + +NN  +YS H E
Sbjct: 1360 SLFIRDVSRNNAGEYSCHVE 1379


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 164 NQSKYSKHTEFRTEH 208
           +QSK++ H E + +H
Sbjct: 115 HQSKFNPHEEVKLQH 129


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 40  RNFKDLQIPVLC 5
           +NF D+ +P+LC
Sbjct: 274 QNFHDIFLPLLC 285


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 40  RNFKDLQIPVLC 5
           +NF D+ +P+LC
Sbjct: 99  QNFHDIFLPLLC 110


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -3

Query: 53  NLMCEKFQR 27
           NL+C+KF+R
Sbjct: 347 NLICDKFER 355


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -3

Query: 53  NLMCEKFQR 27
           NL+C+KF+R
Sbjct: 347 NLICDKFER 355


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,865
Number of Sequences: 336
Number of extensions: 1940
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9565283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)