Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0984
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.40 
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    27   1.2  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    26   2.8  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   3.8  
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe...    25   3.8  
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3...    25   5.0  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    25   5.0  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   5.0  
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    25   6.6  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    24   8.7  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    24   8.7  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    24   8.7  

>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +2

Query: 161 NNQSKYSKHTEFRTEHNQLVYLDDPDKFGTLSGFKIQDEKLVDAGDIKEEEYTQNK 328
           N   ++ K +E R   N L      D+   L+   I  EK+VD+G I ++E  Q K
Sbjct: 382 NKDMRFHKLSEVRQHVNTLKEATKDDELAALASRVI--EKIVDSGPILDKEELQTK 435


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 21/81 (25%), Positives = 41/81 (50%)
 Frame = +2

Query: 167 QSKYSKHTEFRTEHNQLVYLDDPDKFGTLSGFKIQDEKLVDAGDIKEEEYTQNKPLPGKK 346
           ++K ++ T FR  +  L  + DP      +   ++ +K ++  D+K+E+      L GK+
Sbjct: 85  RAKSAEATFFRV-YETLGEVPDPYPLLIEAANNLKTQKQIE--DLKKEKEEMEGSLQGKE 141

Query: 347 LTTRQYADLIKQYIKHKRLKE 409
              R+  +L K+  K+K L E
Sbjct: 142 KLEREVENLRKELDKYKDLVE 162


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 131 RSFFSTSIIQNNQSKYSKH-TEFRTEHNQLVYL 226
           ++FF T+ I+N ++ Y+K  +E+   H+   YL
Sbjct: 222 KTFFETNFIENTKNFYAKESSEYLASHSITDYL 254


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +2

Query: 185 HTEFRTEHNQLVY---LDDPDKFGTLSGFKIQDEKLVDAGDIKEEEYTQNKPL 334
           + EF +EHNQL+      D + F T    KI D +      + +   ++N P+
Sbjct: 691 YVEFLSEHNQLLADFGATDDNDFDTYIFLKIFDYETQQISGLADLHVSKNSPI 743


>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 266 IQDEKLVDAGDIKEEEYTQNKPLPGKKLTTRQYADLIKQYIKHKRLKE 409
           + D+ LVDA  +  E   +NK L        +  D   Q  ++KR++E
Sbjct: 29  VLDDALVDAKQLAHENRLENKDLDELAELEDEEDDEFLQMYRNKRMQE 76


>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 191

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 284 VDAGDIKEEEYTQNKPLPGKKLTTRQYADLIKQYIKHKRL 403
           + AGD   EE  QN+P  G K     Y +LIK+YIK  ++
Sbjct: 32  ISAGDCLREE--QNRP--GSK-----YGNLIKEYIKDGKI 62


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 125 IRRSFFSTSIIQNNQSKYSKHTEFRTEHNQLVYLDDPDKFGTLSGFKIQDEKLVDAGD 298
           ++  +F+  I   N+S+  K  E     NQ+ +   P +    S FK+ D K+  +GD
Sbjct: 51  VKIPYFNAPIYLENKSQIGKIDEVFGPMNQVYFTVKPSEGIVSSSFKVGD-KVYLSGD 107


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 157 YNGS*EKATSNKMYCFNISQQISTCHFELSITKYLI 50
           Y    E+  S K+   N+S Q+S C+ +L  + +++
Sbjct: 746 YKSLQEQLASKKIEVQNVSSQLSICNSQLEQSNHIV 781


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -2

Query: 267 ILKPDNVPNLSGSSKYTN*LCSVRNSVCLEYLD*LF 160
           IL+ +++ N+S S+     +C+VRN    ++LD ++
Sbjct: 143 ILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIY 178


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 113 TIHFIRRSFFSTSIIQ 160
           ++HF    FFSTS+IQ
Sbjct: 274 SLHFFALQFFSTSLIQ 289


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = +2

Query: 140 FSTSIIQNNQSKYSKHTEFRTEHNQLVYLDDPDKFGTLSGFKIQDEKLVDAGDIKEEEYT 319
           F+   I      YS   E   E ++  Y D P++  +   F  QDE  + AG      Y 
Sbjct: 49  FANPFIHEQDDSYSDILE--EEPDEDAY-DSPERPSSTEEFISQDESNISAGSSFMFPYN 105

Query: 320 QNKPL 334
           +  PL
Sbjct: 106 RGHPL 110


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 242 FGTLSGFKIQDEKLVDAGDIKEEE 313
           +GTL  F   +++++D G+  +EE
Sbjct: 320 YGTLPPFVFDEDQMLDGGESTDEE 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,693,482
Number of Sequences: 5004
Number of extensions: 32460
Number of successful extensions: 103
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)