Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0984
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420...    28   3.7  
12_01_1023 + 10458092-10458397,10459126-10459254,10459335-104595...    27   4.9  
12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,340...    27   6.5  
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847...    27   6.5  
05_07_0074 - 27509124-27509199,27509613-27512143                       27   8.6  
03_05_1057 - 30005946-30006088,30006183-30006243,30006493-300065...    27   8.6  
03_04_0192 + 18302114-18302362,18302664-18302732,18302752-183028...    27   8.6  

>07_01_0566 +
           4207894-4207974,4208090-4208144,4208671-4208759,
           4209742-4209794,4209966-4210120,4210201-4210528,
           4210618-4210730,4211394-4211538,4211951-4212259,
           4212340-4212420,4212989-4213349
          Length = 589

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 24/104 (23%), Positives = 44/104 (42%)
 Frame = +2

Query: 89  TNLLRNIKTIHFIRRSFFSTSIIQNNQSKYSKHTEFRTEHNQLVYLDDPDKFGTLSGFKI 268
           TN+ R +K       S   T  +  + S  SKH  F      +  L   +  G+ +G   
Sbjct: 63  TNMHRILKGFMAQNTSLSPTPFLNVSTSCVSKHVVFGKVVTGMPLLKKLEAVGSDTGKPT 122

Query: 269 QDEKLVDAGDIKEEEYTQNKPLPGKKLTTRQYADLIKQYIKHKR 400
            + K+VD G++ + +  Q K    KKL   +     ++ +K ++
Sbjct: 123 CEVKIVDCGEVSDSQ-NQLKGEKEKKLRRTEDNSAAEKRVKTQK 165


>12_01_1023 +
           10458092-10458397,10459126-10459254,10459335-10459553,
           10459649-10459987,10460095-10460199,10460697-10460807,
           10461438-10461688,10462023-10462146,10462440-10462716,
           10463212-10463357,10463449-10463598,10463678-10463910,
           10464246-10464375,10464406-10464510,10464636-10464914
          Length = 967

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +2

Query: 185 HTEFRTEHNQLVYLD-DPDKFGTLSGFKIQDEKLVD--AGDIKEEEYTQNKPLPGKKLTT 355
           H  +    NQ+   D DP+K    S ++ Q ++++      +KE E  +N  +  ++   
Sbjct: 490 HLSYNMLLNQIRCEDGDPEKLLRHSFYQFQADRVLPDLEKQVKELELERNSMIIEEEENL 549

Query: 356 RQYADLIKQYIKHKR 400
           + Y DL++QY   K+
Sbjct: 550 KSYYDLLQQYKNLKK 564


>12_01_0433 -
           3402250-3402536,3402644-3403030,3403523-3403957,
           3404071-3404562,3404718-3404821,3404913-3404994,
           3405085-3405441,3405532-3406089,3406376-3406479,
           3406575-3406650,3406764-3406898,3407192-3407494,
           3407581-3408345,3409459-3412591,3412763-3412882
          Length = 2445

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 266 IQDEKLVDAGDIKEEEYTQNKPL-PGKKLTTRQYA 367
           + DEK+ D   +++EE+  +K   PGKKL  ++ A
Sbjct: 598 LNDEKMDDCEMVRDEEHKHSKGNDPGKKLAIKEPA 632


>04_03_0977 +
           21381857-21383757,21384299-21384458,21384669-21384717,
           21385117-21385169
          Length = 720

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 212 QLVYLDDPDKFGTLSGFKIQDEKLVDAGDIKE 307
           + V   + DKFG  S FKI D  LV + ++ E
Sbjct: 532 EAVVAKEEDKFGQSSSFKICDLNLVGSPEVAE 563


>05_07_0074 - 27509124-27509199,27509613-27512143
          Length = 868

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +2

Query: 245 GTLSGFKIQDEKLVDAGDIKEEEYTQNKPLPGKKLTTRQYADLIKQYIKHK 397
           G+LSG K    K VD      E+Y  NK   GK   +  Y DL  ++   K
Sbjct: 418 GSLSGLKYNYTK-VDEAKKYYEKYGLNKKRKGKFPDSNSYRDLTFRFFLQK 467


>03_05_1057 -
           30005946-30006088,30006183-30006243,30006493-30006566,
           30006939-30007020,30007097-30007355,30007633-30007682,
           30008243-30008275
          Length = 233

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 131 RSFFSTSIIQNNQSKYSKHTEFRTEHNQLVYLDDPDKFGTLSGFKIQDEKLV 286
           R +    I+Q   SK +K  +  TE NQL+ +  PD    L   ++  EK +
Sbjct: 141 RDYLRKIIVQGRSSKSTKVGDIMTEENQLITV-KPDT-RVLQAMQLMTEKRI 190


>03_04_0192 +
           18302114-18302362,18302664-18302732,18302752-18302823,
           18303545-18303710,18303967-18304604
          Length = 397

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 239 YQDHLNTPIDCVLFGILYVWNI 174
           Y D LN PID   F +L  W +
Sbjct: 363 YLDELNVPIDDSTFNVLNFWKV 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,505,816
Number of Sequences: 37544
Number of extensions: 162529
Number of successful extensions: 367
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)