Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0984
         (433 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52732| Best HMM Match : M (HMM E-Value=0.019)                       33   0.076
SB_32384| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.53 
SB_42366| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_40250| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_25228| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_14048| Best HMM Match : CBF (HMM E-Value=9.6e-17)                   27   5.0  
SB_6693| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.0  
SB_44831| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_23676| Best HMM Match : DUF904 (HMM E-Value=0.44)                   27   5.0  
SB_52972| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)                     27   6.6  
SB_3948| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.6  
SB_29637| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_40663| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
          Length = 1366

 Score = 33.5 bits (73), Expect = 0.076
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
 Frame = +2

Query: 272  DEKLVDAGDIKEEEYTQNKPLPGKKLTTRQYADLIKQYI-----KHKRLKEAIDVFGGE 433
            +EKL+D   + EE  ++N+ L  K L   +  D IKQ +     +H+ LK A+ +  GE
Sbjct: 1122 EEKLMDLSRVGEELKSENEGLQQKCLDLEKQRDTIKQDLADVQKEHENLKSAVSISEGE 1180


>SB_32384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +2

Query: 230 DPDKFGTLSGFKIQDEKLVDAGDIKEEEYTQNKPL---PGKKLTTRQYADLIKQYIK 391
           D +K G+ SG ++ +E   +  +  +EE  + KP+   P KK TT + A+ +   +K
Sbjct: 462 DDNKIGSGSGAEVDEEDEPEEDEEDDEETKEAKPIIQTPSKKETTSKLAEPVTNPVK 518


>SB_42366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 140 FSTSIIQNNQSKYSKHTEFRTEHNQLVYLDDPDKFG-TLSGFKIQDEKLVDAGDI 301
           F TS+  N++ K  +  E  T   + +YL  PDK G    GF+I D+ L +   +
Sbjct: 174 FRTSVWNNHRVKRQRQKELPTGIPEHIYLC-PDKHGGEKCGFQITDQDLEEVAGL 227


>SB_40250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 259 TGQCPKLIRII*IHQLIVFCSEFCMFGIFRLIILYN 152
           T Q P  I II ++  IVF  ++C+F +  L  +Y+
Sbjct: 130 TPQLPNPINIIMVYAQIVFPLDYCLFLLVVLYFVYS 165


>SB_25228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +2

Query: 230 DPDKFGTLSGFKIQDEKLV---DAGDIKEEEYTQNKPLPGKKLTTRQY 364
           D    GT SG ++ D+      D  D++ E+  +  P P +KLT R Y
Sbjct: 65  DDGSSGTDSGDELNDDSEAEEFDYEDMEAEDEEEEPPDPKRKLTDRDY 112


>SB_14048| Best HMM Match : CBF (HMM E-Value=9.6e-17)
          Length = 573

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +2

Query: 230 DPDKFGTLSGFKIQDEKLV---DAGDIKEEEYTQNKPLPGKKLTTRQY 364
           D    GT SG ++ D+      D  D++ E+  +  P P +KLT R Y
Sbjct: 518 DDGSSGTDSGDELNDDSEAEEFDYEDMEAEDEEEEPPDPKRKLTDRDY 565


>SB_6693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +2

Query: 230 DPDKFGTLSGFKIQDEKLV---DAGDIKEEEYTQNKPLPGKKLTTRQY 364
           D    GT SG ++ D+      D  D++ E+  +  P P +KLT R Y
Sbjct: 502 DDGSSGTDSGDELNDDSEAEEFDYEDMEAEDEEEEPPDPKRKLTDRDY 549


>SB_44831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 167 QSKYSKHTEFRTE-HNQLVYLDDPDKFGTLSGFKIQDEKLVDAGDIKEEEYTQ-NKPLPG 340
           Q K  ++ ++  E +N  V  D+ DK  T   F++  +   DAG++KE E +   +P   
Sbjct: 97  QKKRQEYQDWLAEQYNNKVRADENDK-ETDEAFRLYSQTHPDAGNLKEPELSDYYRPSSN 155

Query: 341 KKLTTRQY 364
           +K+    Y
Sbjct: 156 QKMGEMAY 163


>SB_23676| Best HMM Match : DUF904 (HMM E-Value=0.44)
          Length = 591

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 167 QSKYSKHTEFRTE-HNQLVYLDDPDKFGTLSGFKIQDEKLVDAGDIKEEEYTQ-NKPLPG 340
           Q K  ++ ++  E +N  V  D+ DK  T   F++  +   DAG++KE E +   +P   
Sbjct: 51  QKKRQEYQDWLAEQYNNKVRADENDK-ETDEAFRLYSQTHPDAGNLKEPELSDYYRPSSS 109

Query: 341 KKLTTRQY 364
           +K+    Y
Sbjct: 110 QKMGEMAY 117


>SB_52972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 802

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +2

Query: 89  TNLLRNIKTIHFIRRSFFSTSIIQNNQS---KYSKHTEFRTEHNQLVYLDDPDKFGTLSG 259
           TN  R +K ++  +R   +T  +   Q+   K  K T+ +T +   +Y+    K  T+  
Sbjct: 728 TNRHRIVKKMYHDKRHRATTHKLTVGQAILIKRDKKTKAQTPYETHIYIITETKGSTVKS 787

Query: 260 FKIQDEKLV 286
            +I DEK+V
Sbjct: 788 RRIGDEKIV 796


>SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)
          Length = 1058

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 293 GDIKEEEYTQNKPLPGKKLTTRQYADLIKQYI 388
           GD +E  Y  ++P P +KLT  +  DL ++Y+
Sbjct: 451 GD-EESWYGDSRPKPRRKLTVLEIGDLEREYL 481


>SB_3948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +2

Query: 71  QFKMACTNLLRNIKTIHFIRRSFFSTSIIQNNQSKYSKHTEFRTE-HNQLVYLDDPDKFG 247
           +F + CTN +  ++ I  +      + + QN     S H    T+ H++ ++ D      
Sbjct: 663 KFVLLCTNYVFYMQAITRLFSIVAVSHLAQNRPLLLSNHLTINTKHHHRYIHRDPTQNCT 722

Query: 248 TLSGF 262
           +LSGF
Sbjct: 723 SLSGF 727


>SB_29637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +2

Query: 248 TLSGFKIQDEKLVDAGDIKEEEYTQNKPLPGKKLTTRQY 364
           T  G  I   + +   D     Y Q KP PGK+    Q+
Sbjct: 94  TFMGGMITPPRTLTVDDTTSAHYPQGKPAPGKRAEKHQH 132


>SB_40663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +2

Query: 86  CTNLLRNIKTIHFIRRSFFSTSII---QNNQSKYSKHTEFRTEHNQLVYLDDPDKFGTLS 256
           C N   N + +H I + F ++  I    NNQS ++ +  F T HN  V+ ++        
Sbjct: 16  CVNT--NNQGVHTINQGFDTSHNICVNTNNQSVHTNNKGFDTSHNICVHTNNQGVHTNNQ 73

Query: 257 GFKIQDEKL 283
           GF   ++ +
Sbjct: 74  GFDTNNQSV 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,748,189
Number of Sequences: 59808
Number of extensions: 211086
Number of successful extensions: 463
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)