Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0984
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical pr...    31   0.27 
Z83220-2|CAB05701.2|  905|Caenorhabditis elegans Hypothetical pr...    30   0.62 
AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical ...    27   4.4  
U51999-4|AAA96085.2|  627|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AL032646-1|CAA21676.1|  385|Caenorhabditis elegans Hypothetical ...    27   7.7  
AF025467-3|AAB71035.2|  213|Caenorhabditis elegans Hypothetical ...    27   7.7  

>U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical
           protein F48E3.3 protein.
          Length = 1493

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
 Frame = +2

Query: 218 VYLDDPDKFGTLSGFKIQD------EKLVDAGDIKE----EEYTQNKPLPGKKLTTRQYA 367
           V L + D+   L  +++QD      +K+V+AG        EEY+QN P   + L     +
Sbjct: 269 VNLKESDELTPLKRWELQDLSYQAAQKIVNAGPADAIGTLEEYSQNFPTHARALAKTSVS 328

Query: 368 DLI-KQYIKHKRLKEAIDVFGGE 433
           DL+ K+ ++++++ E   +  GE
Sbjct: 329 DLLRKEVLQNRKMLEKASIEVGE 351


>Z83220-2|CAB05701.2|  905|Caenorhabditis elegans Hypothetical
           protein C34B7.2 protein.
          Length = 905

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 24/81 (29%), Positives = 35/81 (43%)
 Frame = +2

Query: 176 YSKHTEFRTEHNQLVYLDDPDKFGTLSGFKIQDEKLVDAGDIKEEEYTQNKPLPGKKLTT 355
           +S H +FR  H    +    D+ G L  F I++ + +    I EE  T  + L   K T 
Sbjct: 657 FSSHEDFRDYHRTYEFTSLDDRIGRL--FSIEN-RAIQVDGINEEPTTHAQFLKLWKTTE 713

Query: 356 RQYADLIKQYIKHKRLKEAID 418
            +  D  K   K K  KE+ D
Sbjct: 714 TKEKDQKKPNKKDKEEKESDD 734


>AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical
           protein C48E7.6 protein.
          Length = 1764

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 122 FIRRSFFSTSIIQNNQSKYSKHTEFRTEHNQLVYLDDPDKFGTLS 256
           F+     + SI + N   ++    F + HN + ++D+P K GTLS
Sbjct: 335 FVLNGTETMSISRQNLFSWTFPKSF-SAHNLIYHIDEPPKLGTLS 378


>U51999-4|AAA96085.2|  627|Caenorhabditis elegans Hypothetical
           protein C43H6.4 protein.
          Length = 627

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +2

Query: 131 RSFFSTSIIQNNQSKYSKHTEFRTEHNQLVYLDDPDKFGTLSGFKIQDEKLVDAGDIKEE 310
           R ++    + NN  +   H E +  H Q+  L D D FG    + ++ E   ++ D  +E
Sbjct: 558 RHYWPIFQLNNNNDQERIHLEEQMRHVQIDRLTDADSFGV--PYFVESEYPYESDDSSDE 615

Query: 311 E 313
           +
Sbjct: 616 D 616


>AL032646-1|CAA21676.1|  385|Caenorhabditis elegans Hypothetical
           protein Y54E2A.2 protein.
          Length = 385

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +2

Query: 227 DDPDKFGTLSGFKIQDEKLVDAGDIKEEEYTQNKPLPGKKLTTRQYADLIKQYIKHKRLK 406
           D+PD+  +L+ F  Q  +L +      E++T       +K       ++I+    HK LK
Sbjct: 297 DEPDEAASLNEFDEQIAELREELQKNREDFTVETAAMDEKKWLDMCREVIRDKTLHKTLK 356

Query: 407 E 409
           E
Sbjct: 357 E 357


>AF025467-3|AAB71035.2|  213|Caenorhabditis elegans Hypothetical
           protein R148.4 protein.
          Length = 213

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 63  VIDNSKWHVLIC*EILKQYILFDVAFSQLPLYKIINLNIPNIQNSE 200
           +++NS  ++L+      Q I+F V F    L  ++NLN PN++ ++
Sbjct: 25  IVENSVLYLLLTALTTLQLIVFIVIFMHPELRNMLNLN-PNLKQNQ 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,226,183
Number of Sequences: 27780
Number of extensions: 178058
Number of successful extensions: 503
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)