Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0984
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   1.9  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   1.9  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   1.9  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   2.6  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   2.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   5.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   5.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.8  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 272 DEKLVDAGDIKEEEYTQNKPLPGKKLTTRQY 364
           DE+  D   +K+E  TQ+       L TR++
Sbjct: 322 DEEEADTRPLKKEPITQSNKRTAGNLATREH 352


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 239 YQDHLNTPIDCVLFGI 192
           Y+D++  P DC+LF I
Sbjct: 120 YEDNIFLPEDCLLFTI 135


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 239 YQDHLNTPIDCVLFGI 192
           Y+D++  P DC+LF I
Sbjct: 135 YEDNIFLPEDCLLFTI 150


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 402 NLLCFMYCLIKSAYCLV 352
           ++ C+MYCL++ A+ LV
Sbjct: 69  SITCYMYCLLE-AFSLV 84


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 402 NLLCFMYCLIKSAYCLV 352
           ++ C+MYCL++ A+ LV
Sbjct: 69  SITCYMYCLLE-AFSLV 84


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 138 FSQLPLYKIINLNIPN 185
           FS LP YK   LN+ N
Sbjct: 315 FSSLPYYKYKYLNVIN 330


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 138 FSQLPLYKIINLNIPN 185
           FS LP YK   LN+ N
Sbjct: 315 FSSLPYYKYKYLNVIN 330


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -3

Query: 209 CVLFGILYV 183
           CV+FG+L+V
Sbjct: 16  CVIFGVLFV 24


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -3

Query: 209 CVLFGILYV 183
           CV+FG+L+V
Sbjct: 16  CVIFGVLFV 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,316
Number of Sequences: 438
Number of extensions: 2308
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)