Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0984
(433 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g21170.1 68417.m03062 pentatricopeptide (PPR) repeat-containi... 31 0.34
At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containi... 31 0.44
At1g63070.1 68414.m07125 pentatricopeptide (PPR) repeat-containi... 28 2.4
At5g60740.1 68418.m07621 ABC transporter family protein similar ... 27 4.1
At1g22660.2 68414.m02832 tRNA-nucleotidyltransferase, putative /... 27 4.1
At1g22660.1 68414.m02831 tRNA-nucleotidyltransferase, putative /... 27 4.1
At1g02150.1 68414.m00141 pentatricopeptide (PPR) repeat-containi... 27 5.5
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 27 7.2
At1g09820.1 68414.m01104 pentatricopeptide (PPR) repeat-containi... 27 7.2
At3g44940.1 68416.m04842 expressed protein 26 9.6
At3g16010.1 68416.m02025 pentatricopeptide (PPR) repeat-containi... 26 9.6
At2g43500.1 68415.m05405 RWP-RK domain-containing protein low si... 26 9.6
At1g32375.1 68414.m03994 F-box family protein contains F-box dom... 26 9.6
>At4g21170.1 68417.m03062 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 534
Score = 31.1 bits (67), Expect = 0.34
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +2
Query: 239 KFGTLSGFKIQD---EKLVDAGDIKEEEYTQNKPLPGK--KLTTRQYADLIKQYIKHKRL 403
KF TL + D E+L D G E K G+ +L Y ++K + KR
Sbjct: 301 KFVTLGDSAVNDKIIERLCDMGKTFASEMLFRKACNGETVRLWDSTYGCMLKALSRKKRT 360
Query: 404 KEAIDVF 424
KEA+DV+
Sbjct: 361 KEAVDVY 367
>At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 867
Score = 30.7 bits (66), Expect = 0.44
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 338 GKKLTTRQYADLIKQYIKHKRLKEAIDVFG 427
G +LT R + L+ YI++KR+ A+D FG
Sbjct: 164 GFELTPRAFNYLLNAYIRNKRMDYAVDCFG 193
>At1g63070.1 68414.m07125 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 590
Score = 28.3 bits (60), Expect = 2.4
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +2
Query: 242 FGTLSGFKIQDEKLVDAGDIKEEEYTQNKPLPGKKLTTRQYADLIKQYIKHKRLKEAIDV 421
F L +++ KLV+A + +E P Y LIK + K+KR++E ++V
Sbjct: 323 FNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPD----VVAYNTLIKGFCKYKRVEEGMEV 378
Query: 422 F 424
F
Sbjct: 379 F 379
>At5g60740.1 68418.m07621 ABC transporter family protein similar to
ATP-binding cassette, sub-family G, member 2
(Placenta-specific ATP- binding cassette transporter)
(Breast cancer resistance protein) SP:Q9UNQ0 from [Homo
sapiens]
Length = 1061
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 399 LLCFMYCLIKSAYCLVVNFLPG 334
L+C +YC+ AY L + F PG
Sbjct: 988 LICLVYCVTGIAYTLAILFEPG 1009
>At1g22660.2 68414.m02832 tRNA-nucleotidyltransferase, putative /
tRNA adenylyltransferase, putative similar to tRNA
nucleotidyltransferase [Lupinus albus] GI:1139585;
contains Pfam profile PF01743: polyA polymerase family
protein
Length = 603
Score = 27.5 bits (58), Expect = 4.1
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +2
Query: 173 KYSKHTEFRTEHNQ--LVYLDDPDKFGTLSGFKIQD-EKLVDAGDIKEEEYTQNKPLPGK 343
K+ ++ R E Q V +PD+ L K++ ++ +D +++ EEYT+N +P
Sbjct: 144 KFKEYLSSRDEEVQGDTVIERNPDQSKHLETAKLRIYDQWIDFVNLRSEEYTENSRIPTM 203
Query: 344 KLTT 355
K T
Sbjct: 204 KFGT 207
>At1g22660.1 68414.m02831 tRNA-nucleotidyltransferase, putative /
tRNA adenylyltransferase, putative similar to tRNA
nucleotidyltransferase [Lupinus albus] GI:1139585;
contains Pfam profile PF01743: polyA polymerase family
protein
Length = 605
Score = 27.5 bits (58), Expect = 4.1
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +2
Query: 173 KYSKHTEFRTEHNQ--LVYLDDPDKFGTLSGFKIQD-EKLVDAGDIKEEEYTQNKPLPGK 343
K+ ++ R E Q V +PD+ L K++ ++ +D +++ EEYT+N +P
Sbjct: 144 KFKEYLSSRDEEVQGDTVIERNPDQSKHLETAKLRIYDQWIDFVNLRSEEYTENSRIPTM 203
Query: 344 KLTT 355
K T
Sbjct: 204 KFGT 207
>At1g02150.1 68414.m00141 pentatricopeptide (PPR) repeat-containing
protein low similiarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile: PF01535 PPR
repeat
Length = 524
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +2
Query: 338 GKKLTTRQYADLIKQYIKHKRLKEAIDVF 424
G+KLT + ++K+ K+KR +A++V+
Sbjct: 94 GRKLTKWELCRVVKELRKYKRANQALEVY 122
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 274 VLYFETGQCPKLIRII*IHQLIVFCSEFCMFGIFRLI 164
+ Y+ G P+L R + H L++F ++ GIFR I
Sbjct: 617 ITYYMIGFAPELSRFL-KHLLVIFLTQQMAGGIFRFI 652
>At1g09820.1 68414.m01104 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 606
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 281 LVDAGDIKEEEYTQNKPLP-GKKLTTRQYADLIKQYIKHKRLKEAIDVFG 427
L + G I E ++K + G + Y LI + K+ LKEA+D+FG
Sbjct: 341 LCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFG 390
>At3g44940.1 68416.m04842 expressed protein
Length = 250
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 110 KTIHFIRRSFFSTSIIQNNQSKYSKHTEFRTEHNQLVYLDD 232
KT +R++ T++ + Q+K H E R QL++L+D
Sbjct: 17 KTTEELRQTLVYTTM-ELEQTKLVAHEELRKRDEQLIHLED 56
>At3g16010.1 68416.m02025 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 642
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 347 LTTRQYADLIKQYIKHKRLKEAIDVF 424
+++R YA +IK + K +L EA+D+F
Sbjct: 477 VSSRVYAVMIKHFGKCGKLSEAVDLF 502
>At2g43500.1 68415.m05405 RWP-RK domain-containing protein low
similarity to nodule inception protein [Lotus japonicus]
GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
Length = 947
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 254 SGFKIQDEKLVDAGDIKEEEYTQNKPLPG 340
+ FK+Q+ K VD EE+ T N+ PG
Sbjct: 717 TSFKLQEAKSVDNAIKLEEDTTMNQARPG 745
>At1g32375.1 68414.m03994 F-box family protein contains F-box domain
Pfam:PF00646
Length = 422
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -2
Query: 207 CSVRNSVCL---EYLD*LFCIMEVEKKLRRIKCI 115
C VR ++C E+L+ L C++ KLR +K +
Sbjct: 296 CLVRLTICTCETEWLNLLMCVLRDSPKLRELKLV 329
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,303,120
Number of Sequences: 28952
Number of extensions: 151045
Number of successful extensions: 447
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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