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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0984
         (433 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21170.1 68417.m03062 pentatricopeptide (PPR) repeat-containi...    31   0.34 
At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containi...    31   0.44 
At1g63070.1 68414.m07125 pentatricopeptide (PPR) repeat-containi...    28   2.4  
At5g60740.1 68418.m07621 ABC transporter family protein similar ...    27   4.1  
At1g22660.2 68414.m02832 tRNA-nucleotidyltransferase, putative /...    27   4.1  
At1g22660.1 68414.m02831 tRNA-nucleotidyltransferase, putative /...    27   4.1  
At1g02150.1 68414.m00141 pentatricopeptide (PPR) repeat-containi...    27   5.5  
At3g16340.1 68416.m02066 ABC transporter family protein similar ...    27   7.2  
At1g09820.1 68414.m01104 pentatricopeptide (PPR) repeat-containi...    27   7.2  
At3g44940.1 68416.m04842 expressed protein                             26   9.6  
At3g16010.1 68416.m02025 pentatricopeptide (PPR) repeat-containi...    26   9.6  
At2g43500.1 68415.m05405 RWP-RK domain-containing protein low si...    26   9.6  
At1g32375.1 68414.m03994 F-box family protein contains F-box dom...    26   9.6  

>At4g21170.1 68417.m03062 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 534

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +2

Query: 239 KFGTLSGFKIQD---EKLVDAGDIKEEEYTQNKPLPGK--KLTTRQYADLIKQYIKHKRL 403
           KF TL    + D   E+L D G     E    K   G+  +L    Y  ++K   + KR 
Sbjct: 301 KFVTLGDSAVNDKIIERLCDMGKTFASEMLFRKACNGETVRLWDSTYGCMLKALSRKKRT 360

Query: 404 KEAIDVF 424
           KEA+DV+
Sbjct: 361 KEAVDVY 367


>At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 867

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 338 GKKLTTRQYADLIKQYIKHKRLKEAIDVFG 427
           G +LT R +  L+  YI++KR+  A+D FG
Sbjct: 164 GFELTPRAFNYLLNAYIRNKRMDYAVDCFG 193


>At1g63070.1 68414.m07125 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 590

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +2

Query: 242 FGTLSGFKIQDEKLVDAGDIKEEEYTQNKPLPGKKLTTRQYADLIKQYIKHKRLKEAIDV 421
           F  L    +++ KLV+A  + +E        P        Y  LIK + K+KR++E ++V
Sbjct: 323 FNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPD----VVAYNTLIKGFCKYKRVEEGMEV 378

Query: 422 F 424
           F
Sbjct: 379 F 379


>At5g60740.1 68418.m07621 ABC transporter family protein similar to
            ATP-binding cassette, sub-family G, member 2
            (Placenta-specific ATP- binding cassette transporter)
            (Breast cancer resistance protein) SP:Q9UNQ0 from [Homo
            sapiens]
          Length = 1061

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 399  LLCFMYCLIKSAYCLVVNFLPG 334
            L+C +YC+   AY L + F PG
Sbjct: 988  LICLVYCVTGIAYTLAILFEPG 1009


>At1g22660.2 68414.m02832 tRNA-nucleotidyltransferase, putative /
           tRNA adenylyltransferase, putative similar to tRNA
           nucleotidyltransferase [Lupinus albus] GI:1139585;
           contains Pfam profile PF01743: polyA polymerase family
           protein
          Length = 603

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +2

Query: 173 KYSKHTEFRTEHNQ--LVYLDDPDKFGTLSGFKIQD-EKLVDAGDIKEEEYTQNKPLPGK 343
           K+ ++   R E  Q   V   +PD+   L   K++  ++ +D  +++ EEYT+N  +P  
Sbjct: 144 KFKEYLSSRDEEVQGDTVIERNPDQSKHLETAKLRIYDQWIDFVNLRSEEYTENSRIPTM 203

Query: 344 KLTT 355
           K  T
Sbjct: 204 KFGT 207


>At1g22660.1 68414.m02831 tRNA-nucleotidyltransferase, putative /
           tRNA adenylyltransferase, putative similar to tRNA
           nucleotidyltransferase [Lupinus albus] GI:1139585;
           contains Pfam profile PF01743: polyA polymerase family
           protein
          Length = 605

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +2

Query: 173 KYSKHTEFRTEHNQ--LVYLDDPDKFGTLSGFKIQD-EKLVDAGDIKEEEYTQNKPLPGK 343
           K+ ++   R E  Q   V   +PD+   L   K++  ++ +D  +++ EEYT+N  +P  
Sbjct: 144 KFKEYLSSRDEEVQGDTVIERNPDQSKHLETAKLRIYDQWIDFVNLRSEEYTENSRIPTM 203

Query: 344 KLTT 355
           K  T
Sbjct: 204 KFGT 207


>At1g02150.1 68414.m00141 pentatricopeptide (PPR) repeat-containing
           protein low similiarity to DNA-binding protein [Triticum
           aestivum] GI:6958202; contains Pfam profile: PF01535 PPR
           repeat
          Length = 524

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 338 GKKLTTRQYADLIKQYIKHKRLKEAIDVF 424
           G+KLT  +   ++K+  K+KR  +A++V+
Sbjct: 94  GRKLTKWELCRVVKELRKYKRANQALEVY 122


>At3g16340.1 68416.m02066 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]; contains Pfam profile: PF00005 ABC
           transporter
          Length = 1416

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 274 VLYFETGQCPKLIRII*IHQLIVFCSEFCMFGIFRLI 164
           + Y+  G  P+L R +  H L++F ++    GIFR I
Sbjct: 617 ITYYMIGFAPELSRFL-KHLLVIFLTQQMAGGIFRFI 652


>At1g09820.1 68414.m01104 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 606

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 281 LVDAGDIKEEEYTQNKPLP-GKKLTTRQYADLIKQYIKHKRLKEAIDVFG 427
           L + G I E    ++K +  G +     Y  LI  + K+  LKEA+D+FG
Sbjct: 341 LCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFG 390


>At3g44940.1 68416.m04842 expressed protein
          Length = 250

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 110 KTIHFIRRSFFSTSIIQNNQSKYSKHTEFRTEHNQLVYLDD 232
           KT   +R++   T++ +  Q+K   H E R    QL++L+D
Sbjct: 17  KTTEELRQTLVYTTM-ELEQTKLVAHEELRKRDEQLIHLED 56


>At3g16010.1 68416.m02025 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 642

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 347 LTTRQYADLIKQYIKHKRLKEAIDVF 424
           +++R YA +IK + K  +L EA+D+F
Sbjct: 477 VSSRVYAVMIKHFGKCGKLSEAVDLF 502


>At2g43500.1 68415.m05405 RWP-RK domain-containing protein low
           similarity to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 947

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 254 SGFKIQDEKLVDAGDIKEEEYTQNKPLPG 340
           + FK+Q+ K VD     EE+ T N+  PG
Sbjct: 717 TSFKLQEAKSVDNAIKLEEDTTMNQARPG 745


>At1g32375.1 68414.m03994 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 422

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -2

Query: 207 CSVRNSVCL---EYLD*LFCIMEVEKKLRRIKCI 115
           C VR ++C    E+L+ L C++    KLR +K +
Sbjct: 296 CLVRLTICTCETEWLNLLMCVLRDSPKLRELKLV 329


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,303,120
Number of Sequences: 28952
Number of extensions: 151045
Number of successful extensions: 447
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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