BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0984 (433 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g21170.1 68417.m03062 pentatricopeptide (PPR) repeat-containi... 31 0.34 At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containi... 31 0.44 At1g63070.1 68414.m07125 pentatricopeptide (PPR) repeat-containi... 28 2.4 At5g60740.1 68418.m07621 ABC transporter family protein similar ... 27 4.1 At1g22660.2 68414.m02832 tRNA-nucleotidyltransferase, putative /... 27 4.1 At1g22660.1 68414.m02831 tRNA-nucleotidyltransferase, putative /... 27 4.1 At1g02150.1 68414.m00141 pentatricopeptide (PPR) repeat-containi... 27 5.5 At3g16340.1 68416.m02066 ABC transporter family protein similar ... 27 7.2 At1g09820.1 68414.m01104 pentatricopeptide (PPR) repeat-containi... 27 7.2 At3g44940.1 68416.m04842 expressed protein 26 9.6 At3g16010.1 68416.m02025 pentatricopeptide (PPR) repeat-containi... 26 9.6 At2g43500.1 68415.m05405 RWP-RK domain-containing protein low si... 26 9.6 At1g32375.1 68414.m03994 F-box family protein contains F-box dom... 26 9.6 >At4g21170.1 68417.m03062 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 534 Score = 31.1 bits (67), Expect = 0.34 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Frame = +2 Query: 239 KFGTLSGFKIQD---EKLVDAGDIKEEEYTQNKPLPGK--KLTTRQYADLIKQYIKHKRL 403 KF TL + D E+L D G E K G+ +L Y ++K + KR Sbjct: 301 KFVTLGDSAVNDKIIERLCDMGKTFASEMLFRKACNGETVRLWDSTYGCMLKALSRKKRT 360 Query: 404 KEAIDVF 424 KEA+DV+ Sbjct: 361 KEAVDVY 367 >At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 867 Score = 30.7 bits (66), Expect = 0.44 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = +2 Query: 338 GKKLTTRQYADLIKQYIKHKRLKEAIDVFG 427 G +LT R + L+ YI++KR+ A+D FG Sbjct: 164 GFELTPRAFNYLLNAYIRNKRMDYAVDCFG 193 >At1g63070.1 68414.m07125 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 590 Score = 28.3 bits (60), Expect = 2.4 Identities = 18/61 (29%), Positives = 30/61 (49%) Frame = +2 Query: 242 FGTLSGFKIQDEKLVDAGDIKEEEYTQNKPLPGKKLTTRQYADLIKQYIKHKRLKEAIDV 421 F L +++ KLV+A + +E P Y LIK + K+KR++E ++V Sbjct: 323 FNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPD----VVAYNTLIKGFCKYKRVEEGMEV 378 Query: 422 F 424 F Sbjct: 379 F 379 >At5g60740.1 68418.m07621 ABC transporter family protein similar to ATP-binding cassette, sub-family G, member 2 (Placenta-specific ATP- binding cassette transporter) (Breast cancer resistance protein) SP:Q9UNQ0 from [Homo sapiens] Length = 1061 Score = 27.5 bits (58), Expect = 4.1 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -2 Query: 399 LLCFMYCLIKSAYCLVVNFLPG 334 L+C +YC+ AY L + F PG Sbjct: 988 LICLVYCVTGIAYTLAILFEPG 1009 >At1g22660.2 68414.m02832 tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putative similar to tRNA nucleotidyltransferase [Lupinus albus] GI:1139585; contains Pfam profile PF01743: polyA polymerase family protein Length = 603 Score = 27.5 bits (58), Expect = 4.1 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Frame = +2 Query: 173 KYSKHTEFRTEHNQ--LVYLDDPDKFGTLSGFKIQD-EKLVDAGDIKEEEYTQNKPLPGK 343 K+ ++ R E Q V +PD+ L K++ ++ +D +++ EEYT+N +P Sbjct: 144 KFKEYLSSRDEEVQGDTVIERNPDQSKHLETAKLRIYDQWIDFVNLRSEEYTENSRIPTM 203 Query: 344 KLTT 355 K T Sbjct: 204 KFGT 207 >At1g22660.1 68414.m02831 tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putative similar to tRNA nucleotidyltransferase [Lupinus albus] GI:1139585; contains Pfam profile PF01743: polyA polymerase family protein Length = 605 Score = 27.5 bits (58), Expect = 4.1 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Frame = +2 Query: 173 KYSKHTEFRTEHNQ--LVYLDDPDKFGTLSGFKIQD-EKLVDAGDIKEEEYTQNKPLPGK 343 K+ ++ R E Q V +PD+ L K++ ++ +D +++ EEYT+N +P Sbjct: 144 KFKEYLSSRDEEVQGDTVIERNPDQSKHLETAKLRIYDQWIDFVNLRSEEYTENSRIPTM 203 Query: 344 KLTT 355 K T Sbjct: 204 KFGT 207 >At1g02150.1 68414.m00141 pentatricopeptide (PPR) repeat-containing protein low similiarity to DNA-binding protein [Triticum aestivum] GI:6958202; contains Pfam profile: PF01535 PPR repeat Length = 524 Score = 27.1 bits (57), Expect = 5.5 Identities = 10/29 (34%), Positives = 20/29 (68%) Frame = +2 Query: 338 GKKLTTRQYADLIKQYIKHKRLKEAIDVF 424 G+KLT + ++K+ K+KR +A++V+ Sbjct: 94 GRKLTKWELCRVVKELRKYKRANQALEVY 122 >At3g16340.1 68416.m02066 ABC transporter family protein similar to PDR5-like ABC transporter GI:1514643 from [Spirodela polyrhiza]; contains Pfam profile: PF00005 ABC transporter Length = 1416 Score = 26.6 bits (56), Expect = 7.2 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -1 Query: 274 VLYFETGQCPKLIRII*IHQLIVFCSEFCMFGIFRLI 164 + Y+ G P+L R + H L++F ++ GIFR I Sbjct: 617 ITYYMIGFAPELSRFL-KHLLVIFLTQQMAGGIFRFI 652 >At1g09820.1 68414.m01104 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 606 Score = 26.6 bits (56), Expect = 7.2 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = +2 Query: 281 LVDAGDIKEEEYTQNKPLP-GKKLTTRQYADLIKQYIKHKRLKEAIDVFG 427 L + G I E ++K + G + Y LI + K+ LKEA+D+FG Sbjct: 341 LCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFG 390 >At3g44940.1 68416.m04842 expressed protein Length = 250 Score = 26.2 bits (55), Expect = 9.6 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = +2 Query: 110 KTIHFIRRSFFSTSIIQNNQSKYSKHTEFRTEHNQLVYLDD 232 KT +R++ T++ + Q+K H E R QL++L+D Sbjct: 17 KTTEELRQTLVYTTM-ELEQTKLVAHEELRKRDEQLIHLED 56 >At3g16010.1 68416.m02025 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 642 Score = 26.2 bits (55), Expect = 9.6 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = +2 Query: 347 LTTRQYADLIKQYIKHKRLKEAIDVF 424 +++R YA +IK + K +L EA+D+F Sbjct: 477 VSSRVYAVMIKHFGKCGKLSEAVDLF 502 >At2g43500.1 68415.m05405 RWP-RK domain-containing protein low similarity to nodule inception protein [Lotus japonicus] GI:6448579; contains Pfam profile: PF02042 RWP-RK domain Length = 947 Score = 26.2 bits (55), Expect = 9.6 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +2 Query: 254 SGFKIQDEKLVDAGDIKEEEYTQNKPLPG 340 + FK+Q+ K VD EE+ T N+ PG Sbjct: 717 TSFKLQEAKSVDNAIKLEEDTTMNQARPG 745 >At1g32375.1 68414.m03994 F-box family protein contains F-box domain Pfam:PF00646 Length = 422 Score = 26.2 bits (55), Expect = 9.6 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%) Frame = -2 Query: 207 CSVRNSVCL---EYLD*LFCIMEVEKKLRRIKCI 115 C VR ++C E+L+ L C++ KLR +K + Sbjct: 296 CLVRLTICTCETEWLNLLMCVLRDSPKLRELKLV 329 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,303,120 Number of Sequences: 28952 Number of extensions: 151045 Number of successful extensions: 447 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 440 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 447 length of database: 12,070,560 effective HSP length: 74 effective length of database: 9,928,112 effective search space used: 685039728 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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