Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0983
         (600 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    24   1.1  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    24   1.1  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   1.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   1.5  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   2.6  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   4.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.6  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   4.6  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   7.9  

>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +2

Query: 434 ISYSTKP--NGPPIEDLFDTIKSNEP 505
           ISYS +    G  I+DL  TIK N P
Sbjct: 292 ISYSLEKLKTGDEIQDLISTIKDNFP 317


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +2

Query: 434 ISYSTKP--NGPPIEDLFDTIKSNEP 505
           ISYS +    G  I+DL  TIK N P
Sbjct: 292 ISYSLEKLKTGDEIQDLISTIKDNFP 317


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 173 SPTHSPSGSPNVGYLPPFL 229
           SP   PS SP+ G+LP +L
Sbjct: 197 SPASLPSISPSGGFLPKWL 215


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 341 DQKIYRQNISMH-QQALYNQQSTYTNIPTSPNISYSTKPNGPPIEDLFDTIKSNEPSVNK 517
           D+   R   S+H  Q   + Q    + P+S +++ +  PNG   + ++D+ K    +V +
Sbjct: 88  DRMDIRDRRSLHGPQQQMDGQEYRPDSPSSMHMANTAAPNGHQTQVVYDSCKLQAAAVTQ 147

Query: 518 S 520
           +
Sbjct: 148 N 148


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 13/78 (16%), Positives = 34/78 (43%)
 Frame = +2

Query: 365 ISMHQQALYNQQSTYTNIPTSPNISYSTKPNGPPIEDLFDTIKSNEPSVNKSLYNDHRFS 544
           +S++     +  ++  ++  +P++  S     P +     T  ++ P++  + Y +   S
Sbjct: 159 VSINNNTSTSSSASSPSVTAAPHLRDSPNYIKPQLH--VSTGSTSSPTIASATYTNSANS 216

Query: 545 WLWK*YDVTKFLWK*HRS 598
            +W    +  F  + HRS
Sbjct: 217 SIWSPASIDSFTLEQHRS 234


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 386 LYNQQSTYTNIPTSPNISY-STKPNGPPIEDLFDTIKSNEPSVNKSLYN 529
           +++++S    +P + +    ST P  PP ED    I  N P   +  +N
Sbjct: 191 VFDRRSLRCVVPPTEDCDVPSTIPPPPPEEDDDSNIPQNNPKNKQHNFN 239


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 218  PPFLLGEINPPTTPRTNSLSPT 283
            P  +LG  N  T P+  ++ PT
Sbjct: 2197 PKCILGRDNDKTKPKPTTMKPT 2218


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 532 IIIQ*FIYRRLIAFYCVE*VFN 467
           ++ + +  RR+  FYCV   FN
Sbjct: 46  LVFKCYNLRRIYYFYCVSITFN 67


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 419 PTSPNISYSTKPNGPP 466
           P SPN   S  P+ PP
Sbjct: 218 PDSPNSKKSATPSPPP 233


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,120
Number of Sequences: 336
Number of extensions: 3269
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)