BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0983 (600 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 28 0.91 SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 28 0.91 SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 27 2.1 SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 26 4.8 SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 26 4.8 SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 6.4 SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 25 6.4 SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 8.5 SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 8.5 >SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schizosaccharomyces pombe|chr 2|||Manual Length = 470 Score = 28.3 bits (60), Expect = 0.91 Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Frame = +2 Query: 17 TRITYTCLSTRI*LLSKLKVGTLRLKEIKRANLVAKSY-TYKRFTKMEPMTLGSPTHSPS 193 TRIT LST L+S K T RL+ A LV+ Y Y++ + + M L Sbjct: 284 TRITLPELST---LVSNCKNLTRRLRP---APLVSSRYLAYQQQQQQQQMNL---QQGIQ 334 Query: 194 GSPNVGYLPPFLLGEINPPT 253 G P+ GY+P +G PPT Sbjct: 335 GYPHQGYMPTQNIGFPWPPT 354 >SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosaccharomyces pombe|chr 2|||Manual Length = 663 Score = 28.3 bits (60), Expect = 0.91 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Frame = +2 Query: 362 NISMHQQALYNQQSTYTNIPTSPNISYSTKPNG--PPIEDLFDTIKSNEPSVNKS 520 NI+ Q+ + ++T IP+ ++YS P PP E DTI PSV+ S Sbjct: 59 NIASFQKP--SSKATRPYIPSYTRLTYSVPPLPIPPPSEQSLDTIIYRNPSVSSS 111 >SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces pombe|chr 1|||Manual Length = 576 Score = 27.1 bits (57), Expect = 2.1 Identities = 16/44 (36%), Positives = 17/44 (38%) Frame = +2 Query: 146 TKMEPMTLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLS 277 T P S HSP +PN L P LG N N LS Sbjct: 421 THFTPANNSSANHSPLMAPNASTLNPSSLGASNLSQPSLANHLS 464 >SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Schizosaccharomyces pombe|chr 1|||Manual Length = 434 Score = 25.8 bits (54), Expect = 4.8 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%) Frame = +2 Query: 191 SGSPNVGYLPPFL-LGEINPPTTPR--TNS 271 SG P+V Y PP + + N P TP+ TNS Sbjct: 369 SGLPSVAYTPPVMHIPTTNSPLTPQSFTNS 398 >SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2|||Manual Length = 1157 Score = 25.8 bits (54), Expect = 4.8 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = +2 Query: 410 TNIPTSPNISYSTKPNGPPIEDLFDTIKSNEPSVNKS 520 +NIPT P+ S S K N P F + P V +S Sbjct: 11 SNIPTQPSPSASPKSNKPSSAQRFGNLPWVAPDVIQS 47 >SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 791 Score = 25.4 bits (53), Expect = 6.4 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%) Frame = +2 Query: 146 TKMEPMTLGSPTHSPS---GSPNVGYLPPFLLGEINPPTTP 259 T + P G+PT S GSP +GY+ P + P P Sbjct: 618 TSVAPSPNGTPTSGNSSTVGSPMIGYMAPQFIPPYAMPQFP 658 >SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 537 Score = 25.4 bits (53), Expect = 6.4 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = +2 Query: 146 TKMEPMTLGSPTHSPSGSP 202 + +EP + SPT SP+GSP Sbjct: 470 SNIEPNGVRSPTSSPTGSP 488 >SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1689 Score = 25.0 bits (52), Expect = 8.5 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Frame = -1 Query: 516 LFTDGSLLFIVSNKSSMG-GPFGLV 445 LF DG LL + +KSS G FGLV Sbjct: 785 LFDDGELLCGILDKSSFGASAFGLV 809 >SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 653 Score = 25.0 bits (52), Expect = 8.5 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = +2 Query: 158 PMTLGSPTHSPSGSPNVGY 214 PM G PT P+G P GY Sbjct: 511 PMYPGMPTQFPAGGPAPGY 529 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,451,245 Number of Sequences: 5004 Number of extensions: 52631 Number of successful extensions: 169 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 163 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 169 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 262236260 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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