Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0983
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    28   0.91 
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    28   0.91 
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    27   2.1  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    26   4.8  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   4.8  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   6.4  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    25   6.4  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   8.5  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   8.5  

>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +2

Query: 17  TRITYTCLSTRI*LLSKLKVGTLRLKEIKRANLVAKSY-TYKRFTKMEPMTLGSPTHSPS 193
           TRIT   LST   L+S  K  T RL+    A LV+  Y  Y++  + + M L        
Sbjct: 284 TRITLPELST---LVSNCKNLTRRLRP---APLVSSRYLAYQQQQQQQQMNL---QQGIQ 334

Query: 194 GSPNVGYLPPFLLGEINPPT 253
           G P+ GY+P   +G   PPT
Sbjct: 335 GYPHQGYMPTQNIGFPWPPT 354


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 362 NISMHQQALYNQQSTYTNIPTSPNISYSTKPNG--PPIEDLFDTIKSNEPSVNKS 520
           NI+  Q+   + ++T   IP+   ++YS  P    PP E   DTI    PSV+ S
Sbjct: 59  NIASFQKP--SSKATRPYIPSYTRLTYSVPPLPIPPPSEQSLDTIIYRNPSVSSS 111


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = +2

Query: 146 TKMEPMTLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLS 277
           T   P    S  HSP  +PN   L P  LG  N       N LS
Sbjct: 421 THFTPANNSSANHSPLMAPNASTLNPSSLGASNLSQPSLANHLS 464


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +2

Query: 191 SGSPNVGYLPPFL-LGEINPPTTPR--TNS 271
           SG P+V Y PP + +   N P TP+  TNS
Sbjct: 369 SGLPSVAYTPPVMHIPTTNSPLTPQSFTNS 398


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 410 TNIPTSPNISYSTKPNGPPIEDLFDTIKSNEPSVNKS 520
           +NIPT P+ S S K N P     F  +    P V +S
Sbjct: 11  SNIPTQPSPSASPKSNKPSSAQRFGNLPWVAPDVIQS 47


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = +2

Query: 146 TKMEPMTLGSPTHSPS---GSPNVGYLPPFLLGEINPPTTP 259
           T + P   G+PT   S   GSP +GY+ P  +     P  P
Sbjct: 618 TSVAPSPNGTPTSGNSSTVGSPMIGYMAPQFIPPYAMPQFP 658


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 146 TKMEPMTLGSPTHSPSGSP 202
           + +EP  + SPT SP+GSP
Sbjct: 470 SNIEPNGVRSPTSSPTGSP 488


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 516 LFTDGSLLFIVSNKSSMG-GPFGLV 445
           LF DG LL  + +KSS G   FGLV
Sbjct: 785 LFDDGELLCGILDKSSFGASAFGLV 809


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 158 PMTLGSPTHSPSGSPNVGY 214
           PM  G PT  P+G P  GY
Sbjct: 511 PMYPGMPTQFPAGGPAPGY 529


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,245
Number of Sequences: 5004
Number of extensions: 52631
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)