Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0983
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0610 - 25449085-25453284                                         29   3.8  
11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657     28   6.6  
03_05_0793 + 27755704-27756386,27756473-27757274,27757379-277576...    28   6.6  
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    28   6.6  
10_08_0775 + 20484776-20486035                                         27   8.7  
01_06_1682 - 39130696-39131705,39132355-39132583                       27   8.7  
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    27   8.7  

>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +2

Query: 155 EPMTLGSPTHSPSGSPNV-GYLPPFLLGEINPPTTPRTNSLSPTK 286
           EP T  SP  +P  SP   G  PP      +PP  P  ++ SP K
Sbjct: 534 EPPTEYSPPATPESSPPPEGKSPPTPTASHSPPPVPEGHTPSPPK 578



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +2

Query: 158 PMTLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLSPTK 286
           P+  G     P   P  G  PP    + +PP TP   + SP K
Sbjct: 567 PVPEGHTPSPPKSGPPAGESPPTPESKASPPPTPEEYTPSPPK 609


>11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657
          Length = 922

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 83  LRLKEIKRANLVAKSYTYKRFTKMEPMTLGSPTHSPSGSPNVGYLPPFLLGEINPPTTP 259
           L+  +I    L A   T  + TK+  + + + T   +G  N+  L   LLG+I+  T P
Sbjct: 619 LQTLDIMNTGLEALPATIGKLTKLMRLRVDNGTRVHAGVANLTSLQELLLGKISDDTCP 677


>03_05_0793 +
           27755704-27756386,27756473-27757274,27757379-27757634,
           27758355-27758566,27760494-27760709
          Length = 722

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 107 ANLVAKSYTYKRFTKMEPMTLGSP 178
           +N+V  + +YKR  + +PM LG P
Sbjct: 76  SNIVVNTLSYKRLPERKPMVLGRP 99


>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = +2

Query: 98  IKRANLVAKSYTYKRFTKMEPMTLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLS 277
           IKRA+   +S+TY R            T   +G P     P F   +   P  P T   +
Sbjct: 11  IKRAS---RSHTYHRRGLWAIKAKNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKAN 67

Query: 278 PTKGRN 295
           PTK R+
Sbjct: 68  PTKLRS 73


>10_08_0775 + 20484776-20486035
          Length = 419

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +2

Query: 125 SYTYKRFTKMEPMTLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLSPTKGRNLAF 304
           S TY+      P+    PT + SG    GY  P + G+     +    ++   +GR LAF
Sbjct: 111 SNTYRAEQCGSPLCKSIPTRNCSGDGECGYEAPSMFGDTFGIASTDAIAIGNAEGR-LAF 169

Query: 305 G 307
           G
Sbjct: 170 G 170


>01_06_1682 - 39130696-39131705,39132355-39132583
          Length = 412

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +2

Query: 158 PMTLGSPTHSPSGSPNVGYLPPFLLGEIN-PPTTPRTNS 271
           P+ +  P H+ S  P V Y PP  L       TTP  NS
Sbjct: 363 PLEMSPPAHATSPQPLVHYSPPPPLQHAGISSTTPSVNS 401


>01_05_0279 +
           20318440-20318688,20318785-20318931,20319449-20319611,
           20319770-20319887,20320607-20320676,20320774-20320854,
           20320924-20320959,20321129-20321149,20321586-20321642,
           20321716-20321827,20321905-20322178,20322454-20322556,
           20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = +2

Query: 431 NISYSTKPNGPPIEDLFDTIKSNEPSVNKSLYNDHRFSWLW 553
           N+ ++   + P    L + +K +  S+N + +N +   W+W
Sbjct: 275 NLIWAANDSRPKNRILTENLKEDTISINHNWFNGYNLHWVW 315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,865,458
Number of Sequences: 37544
Number of extensions: 308174
Number of successful extensions: 824
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)