Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0983
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29257| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.54 
SB_33152| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_27955| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_28665| Best HMM Match : TGF_beta (HMM E-Value=1.2e-22)              29   2.2  
SB_53353| Best HMM Match : Vicilin_N (HMM E-Value=8.3)                 29   3.8  
SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)                     28   6.6  
SB_39661| Best HMM Match : KOW (HMM E-Value=1.1e-07)                   28   6.6  
SB_7820| Best HMM Match : zf-HYPF (HMM E-Value=2.5)                    28   6.6  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_29257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 494

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 3/107 (2%)
 Frame = +2

Query: 158 PMTLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLSPTKGRNLAFGXXXXXXXXXX 337
           P    SPT +    P+   +  F  GE +PP  P   SL P  G+  A            
Sbjct: 317 PQIPESPTDADDNEPDYVNIENFPEGEESPPPVPPPPSLPPRPGKQRATSVTSAHEERAP 376

Query: 338 XDQKIYRQN-ISMHQQALYNQQSTYTNIPTSPN--ISYSTKPNGPPI 469
               + R N + +       +      +P  P+  +S     N PP+
Sbjct: 377 PAHLVQRMNSMPLISTGFKMENDQLPGLPPKPDRPLSLQRDANAPPL 423


>SB_33152| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +2

Query: 149 KMEPMTLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLSPTKGRNLAF 304
           K  P  + SPT SP GSP    +P   +G+ +P  T R  S++P +  + ++
Sbjct: 111 KEPPYKMSSPTPSPRGSPIKATVPFGQIGDGSPTATER--SITPIQTSSFSY 160


>SB_27955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 143 FTKMEPMTLGSPTHSPSGSPNVGYLPPFLLG-EINPPTTPRTNSLSPTKG 289
           F KM P+T    + +  G       P F    + NPP TP+   ++P+ G
Sbjct: 401 FPKMRPLTPSLMSPTSQGIQQAPQTPSFQASPKFNPPGTPQNRPVTPSSG 450


>SB_28665| Best HMM Match : TGF_beta (HMM E-Value=1.2e-22)
          Length = 350

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +2

Query: 380 QALYNQQSTYTNIPTSPNISYSTKPNGPPIEDLFDTIKSNEPSVNKSLYNDH 535
           QA+  Q      +P +PN++    PN PP+  L +T ++ E + ++  + D+
Sbjct: 36  QAIQQQILDKLGLPFAPNLTDPKIPNIPPLLRLLETSRNAELAASRVKHEDN 87


>SB_53353| Best HMM Match : Vicilin_N (HMM E-Value=8.3)
          Length = 171

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 89  LKEIKRANLVAKSYTYKRFTKMEPMTLGSPTHSPSGSPNVGYLPPFL 229
           LKE+K+ +        K    + P+ L  PTH+P   P  GY+ P L
Sbjct: 119 LKELKKTSEFLYKEAIKADKTLFPLQLRGPTHTP---PLTGYIAPDL 162


>SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)
          Length = 1470

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 176 PTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLSPTKGRNLAFG 307
           PTH+  G P++   P   +    PP TP+  + +P+ G+  A G
Sbjct: 713 PTHAHLGMPSLIGQPA--MTATRPPGTPKEQTNTPSSGQQNAIG 754


>SB_39661| Best HMM Match : KOW (HMM E-Value=1.1e-07)
          Length = 487

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +2

Query: 158 PMTLGS-PTHSP-SGSPN-VGYLPPFLLGEINPPTTPRTNSLSPTKG 289
           P   GS PT+SP + SP+  GY  P   G   PP +P  N  +P  G
Sbjct: 319 PAMYGSEPTYSPYTQSPSPAGYANPMTPGGGLPPVSPAYNPHTPGAG 365


>SB_7820| Best HMM Match : zf-HYPF (HMM E-Value=2.5)
          Length = 307

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 164 TLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLSPT 283
           T G P+    G+ +    P        PPTTP T +L+PT
Sbjct: 166 TTGGPSGPTGGASSA--TPSATTASTAPPTTPSTTTLAPT 203


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 146 TKMEPMTLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNS-LSPTK 286
           T   P T GSP  +PS  P V    P  +     P T  T+S LSP K
Sbjct: 716 TDKRPSTSGSPVGNPS-HPPVHQGSPSSISNTGSPITMHTSSTLSPCK 762


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,719,399
Number of Sequences: 59808
Number of extensions: 376865
Number of successful extensions: 1003
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)