Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0983
         (600 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    27   0.61 
AF457563-1|AAL68793.1|   48|Anopheles gambiae hypothetical prote...    24   3.3  
AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.      23   5.7  
AY645023-1|AAT92559.1|   99|Anopheles gambiae wingless protein.        23   10.0 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    23   10.0 

>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 26.6 bits (56), Expect = 0.61
 Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
 Frame = +2

Query: 110 NLVAKSY-TYKRFTKMEPMTLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLSPTK 286
           N +A  Y    + T   P T GS      GS N GY PP        P TP     SP  
Sbjct: 15  NSIASCYPNNSQNTNSSPNTAGS-----QGSQNDGYFPPSTYAPNIYPGTPHQAHYSPQS 69

Query: 287 GRNLA 301
              LA
Sbjct: 70  YNPLA 74


>AF457563-1|AAL68793.1|   48|Anopheles gambiae hypothetical protein
           16 protein.
          Length = 48

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 215 LPPFLLGEINPPTTPRTNSLSPTKGR 292
           LPP     + PP  PR + L  T GR
Sbjct: 22  LPPAYSTTLTPPAPPRLSHLGITIGR 47


>AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.
          Length = 565

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 67  IKSRNVTVKRN*TCKL 114
           IKS+N+ VKRN  C +
Sbjct: 388 IKSKNILVKRNGQCAI 403


>AY645023-1|AAT92559.1|   99|Anopheles gambiae wingless protein.
          Length = 99

 Score = 22.6 bits (46), Expect = 10.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 173 SPTHSPSGSPNVGYLPP 223
           +P H P GS ++ YL P
Sbjct: 7   NPEHKPPGSKDLVYLEP 23


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 22.6 bits (46), Expect = 10.0
 Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 1/93 (1%)
 Frame = +2

Query: 185 SPSGSPNVGYLPPFLLGEINPPTTPRTNSLSPTKGRNLA-FGXXXXXXXXXXXDQKIYRQ 361
           S  G P +  L  F+  E   P    T S SP   ++L+                   +Q
Sbjct: 422 SSGGRPPLHALKDFINKEPPRPGQSPTQSPSPGSQQSLSPANTDENFSYRPGAKPNSGQQ 481

Query: 362 NISMHQQALYNQQSTYTNIPTSPNISYSTKPNG 460
                QQ  Y  Q      P +PN S +  P G
Sbjct: 482 QQQQQQQQQYKLQPPPGGRPNAPNPSSAVTPGG 514


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 611,604
Number of Sequences: 2352
Number of extensions: 12756
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58029966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)