Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0983
(600 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC061698-1|AAH61698.1| 326|Homo sapiens nucleoporin 35kDa protein. 46 1e-04
BC047029-1|AAH47029.1| 326|Homo sapiens NUP35 protein protein. 46 1e-04
AF514993-1|AAM76704.1| 326|Homo sapiens nucleoporin Nup35 protein. 46 1e-04
AF411516-1|AAL86379.1| 326|Homo sapiens mitotic phosphoprotein ... 46 1e-04
AC064871-3|AAY24198.1| 132|Homo sapiens unknown protein. 46 1e-04
BC082760-1|AAH82760.1| 1062|Homo sapiens ATXN2L protein protein. 32 1.3
BC068012-1|AAH68012.1| 1098|Homo sapiens ATXN2L protein protein. 32 1.3
AJ317974-1|CAC38072.3| 1044|Homo sapiens ataxin-2 related domain... 32 1.3
AJ317973-1|CAC38071.3| 1044|Homo sapiens ataxin-2 related domain... 32 1.3
AJ317972-1|CAC38070.3| 1097|Homo sapiens ataxin-2 related domain... 32 1.3
AJ317971-1|CAC38069.3| 1062|Homo sapiens ataxin-2 related domain... 32 1.3
AJ317970-1|CAC38068.1| 1075|Homo sapiens ataxin-2 related domain... 32 1.3
BC041696-1|AAH41696.1| 509|Homo sapiens t-complex 11 (mouse)-li... 31 2.3
AL121926-3|CAC48254.1| 509|Homo sapiens dJ85M6.3 (similar to te... 31 2.3
AK002198-1|BAA92131.1| 509|Homo sapiens protein ( Homo sapiens ... 31 2.3
M59465-1|AAA51550.1| 790|Homo sapiens A20 protein. 31 4.1
BC114480-1|AAI14481.1| 790|Homo sapiens tumor necrosis factor, ... 31 4.1
BC113871-1|AAI13872.1| 790|Homo sapiens tumor necrosis factor, ... 31 4.1
AY248754-1|AAO61093.1| 790|Homo sapiens tumor necrosis factor, ... 31 4.1
AL357060-4|CAH72937.1| 790|Homo sapiens tumor necrosis factor, ... 31 4.1
AL157444-1|CAB75664.1| 636|Homo sapiens hypothetical protein pr... 31 4.1
U69263-1|AAC51260.2| 956|Homo sapiens matrilin-2 precursor prot... 29 9.4
BC016394-1|AAH16394.1| 715|Homo sapiens MATN2 protein protein. 29 9.4
AY358895-1|AAQ89254.1| 915|Homo sapiens MATN2 protein. 29 9.4
AL833931-1|CAD38787.1| 1016|Homo sapiens hypothetical protein pr... 29 9.4
AK027775-1|BAB55358.1| 537|Homo sapiens protein ( Homo sapiens ... 29 9.4
>BC061698-1|AAH61698.1| 326|Homo sapiens nucleoporin 35kDa protein.
Length = 326
Score = 45.6 bits (103), Expect = 1e-04
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +2
Query: 155 EPMTLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLS-PTKG 289
EPM LGSPT SP N +LP FL+G++ P TP+ S+S P+ G
Sbjct: 16 EPMMLGSPT-SPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVG 60
>BC047029-1|AAH47029.1| 326|Homo sapiens NUP35 protein protein.
Length = 326
Score = 45.6 bits (103), Expect = 1e-04
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +2
Query: 155 EPMTLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLS-PTKG 289
EPM LGSPT SP N +LP FL+G++ P TP+ S+S P+ G
Sbjct: 16 EPMMLGSPT-SPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVG 60
>AF514993-1|AAM76704.1| 326|Homo sapiens nucleoporin Nup35 protein.
Length = 326
Score = 45.6 bits (103), Expect = 1e-04
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +2
Query: 155 EPMTLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLS-PTKG 289
EPM LGSPT SP N +LP FL+G++ P TP+ S+S P+ G
Sbjct: 16 EPMMLGSPT-SPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVG 60
>AF411516-1|AAL86379.1| 326|Homo sapiens mitotic phosphoprotein 44
protein.
Length = 326
Score = 45.6 bits (103), Expect = 1e-04
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +2
Query: 155 EPMTLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLS-PTKG 289
EPM LGSPT SP N +LP FL+G++ P TP+ S+S P+ G
Sbjct: 16 EPMMLGSPT-SPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVG 60
>AC064871-3|AAY24198.1| 132|Homo sapiens unknown protein.
Length = 132
Score = 45.6 bits (103), Expect = 1e-04
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +2
Query: 155 EPMTLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLS-PTKG 289
EPM LGSPT SP N +LP FL+G++ P TP+ S+S P+ G
Sbjct: 16 EPMMLGSPT-SPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVG 60
>BC082760-1|AAH82760.1| 1062|Homo sapiens ATXN2L protein protein.
Length = 1062
Score = 32.3 bits (70), Expect = 1.3
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 164 TLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLSP 280
TL SP++ PSG +V PP +G + PP +P++ + +P
Sbjct: 421 TLSSPSNRPSGETSVP--PPPAVGRMYPPRSPKSAAPAP 457
>BC068012-1|AAH68012.1| 1098|Homo sapiens ATXN2L protein protein.
Length = 1098
Score = 32.3 bits (70), Expect = 1.3
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 164 TLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLSP 280
TL SP++ PSG +V PP +G + PP +P++ + +P
Sbjct: 444 TLSSPSNRPSGETSVP--PPPAVGRMYPPRSPKSAAPAP 480
>AJ317974-1|CAC38072.3| 1044|Homo sapiens ataxin-2 related domain
protein protein.
Length = 1044
Score = 32.3 bits (70), Expect = 1.3
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 164 TLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLSP 280
TL SP++ PSG +V PP +G + PP +P++ + +P
Sbjct: 421 TLSSPSNRPSGETSVP--PPPAVGRMYPPRSPKSAAPAP 457
>AJ317973-1|CAC38071.3| 1044|Homo sapiens ataxin-2 related domain
protein protein.
Length = 1044
Score = 32.3 bits (70), Expect = 1.3
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 164 TLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLSP 280
TL SP++ PSG +V PP +G + PP +P++ + +P
Sbjct: 421 TLSSPSNRPSGETSVP--PPPAVGRMYPPRSPKSAAPAP 457
>AJ317972-1|CAC38070.3| 1097|Homo sapiens ataxin-2 related domain
protein protein.
Length = 1097
Score = 32.3 bits (70), Expect = 1.3
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 164 TLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLSP 280
TL SP++ PSG +V PP +G + PP +P++ + +P
Sbjct: 421 TLSSPSNRPSGETSVP--PPPAVGRMYPPRSPKSAAPAP 457
>AJ317971-1|CAC38069.3| 1062|Homo sapiens ataxin-2 related domain
protein protein.
Length = 1062
Score = 32.3 bits (70), Expect = 1.3
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 164 TLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLSP 280
TL SP++ PSG +V PP +G + PP +P++ + +P
Sbjct: 421 TLSSPSNRPSGETSVP--PPPAVGRMYPPRSPKSAAPAP 457
>AJ317970-1|CAC38068.1| 1075|Homo sapiens ataxin-2 related domain
protein protein.
Length = 1075
Score = 32.3 bits (70), Expect = 1.3
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 164 TLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLSP 280
TL SP++ PSG +V PP +G + PP +P++ + +P
Sbjct: 421 TLSSPSNRPSGETSVP--PPPAVGRMYPPRSPKSAAPAP 457
>BC041696-1|AAH41696.1| 509|Homo sapiens t-complex 11 (mouse)-like
1 protein.
Length = 509
Score = 31.5 bits (68), Expect = 2.3
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -1
Query: 198 LPEGECVGLPSVIGSIFVNLLYVYDLATKFARLISFNRNV--PTFNLLRSQILV 43
L G LP+V G + + ++A KFARL+++N+ V P ++ + S+ILV
Sbjct: 454 LASGHQKPLPTVPGGLSPVQRELEEVAIKFARLVNYNKMVFCPYYDAILSKILV 507
>AL121926-3|CAC48254.1| 509|Homo sapiens dJ85M6.3 (similar to
testis-specific protein PBS13) protein.
Length = 509
Score = 31.5 bits (68), Expect = 2.3
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -1
Query: 198 LPEGECVGLPSVIGSIFVNLLYVYDLATKFARLISFNRNV--PTFNLLRSQILV 43
L G LP+V G + + ++A KFARL+++N+ V P ++ + S+ILV
Sbjct: 454 LASGHQKPLPTVPGGLSPVQRELEEVAIKFARLVNYNKMVFCPYYDAILSKILV 507
>AK002198-1|BAA92131.1| 509|Homo sapiens protein ( Homo sapiens
cDNA FLJ11336 fis, clone PLACE1010661, weakly similar to
TESTIS-SPECIFIC PROTEIN PBS13. ).
Length = 509
Score = 31.5 bits (68), Expect = 2.3
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -1
Query: 198 LPEGECVGLPSVIGSIFVNLLYVYDLATKFARLISFNRNV--PTFNLLRSQILV 43
L G LP+V G + + ++A KFARL+++N+ V P ++ + S+ILV
Sbjct: 454 LASGHQKPLPTVPGGLSPVQRELEEVAIKFARLVNYNKMVFCPYYDAILSKILV 507
>M59465-1|AAA51550.1| 790|Homo sapiens A20 protein.
Length = 790
Score = 30.7 bits (66), Expect = 4.1
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = -1
Query: 285 LVGDKLFVLGVVGGFISPSRKGGKYPTLGLPEGECVGLPSVIG---SIFVNLLYVYDLAT 115
++ DK+ G +P + GG Y L P EC P V+G FV L+ + D
Sbjct: 209 VISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLGYDSHHFVPLVTLKDSGP 268
Query: 114 KFARLISFNRNVPTFNLLRSQILVD 40
+ + NR+ F L+ L D
Sbjct: 269 EIRAVPLVNRDRGRFEDLKVHFLTD 293
>BC114480-1|AAI14481.1| 790|Homo sapiens tumor necrosis factor,
alpha-induced protein 3 protein.
Length = 790
Score = 30.7 bits (66), Expect = 4.1
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = -1
Query: 285 LVGDKLFVLGVVGGFISPSRKGGKYPTLGLPEGECVGLPSVIG---SIFVNLLYVYDLAT 115
++ DK+ G +P + GG Y L P EC P V+G FV L+ + D
Sbjct: 209 VISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLGYDSHHFVPLVTLKDSGP 268
Query: 114 KFARLISFNRNVPTFNLLRSQILVD 40
+ + NR+ F L+ L D
Sbjct: 269 EIRAVPLVNRDRGRFEDLKVHFLTD 293
>BC113871-1|AAI13872.1| 790|Homo sapiens tumor necrosis factor,
alpha-induced protein 3 protein.
Length = 790
Score = 30.7 bits (66), Expect = 4.1
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = -1
Query: 285 LVGDKLFVLGVVGGFISPSRKGGKYPTLGLPEGECVGLPSVIG---SIFVNLLYVYDLAT 115
++ DK+ G +P + GG Y L P EC P V+G FV L+ + D
Sbjct: 209 VISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLGYDSHHFVPLVTLKDSGP 268
Query: 114 KFARLISFNRNVPTFNLLRSQILVD 40
+ + NR+ F L+ L D
Sbjct: 269 EIRAVPLVNRDRGRFEDLKVHFLTD 293
>AY248754-1|AAO61093.1| 790|Homo sapiens tumor necrosis factor,
alpha-induced protein 3 protein.
Length = 790
Score = 30.7 bits (66), Expect = 4.1
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = -1
Query: 285 LVGDKLFVLGVVGGFISPSRKGGKYPTLGLPEGECVGLPSVIG---SIFVNLLYVYDLAT 115
++ DK+ G +P + GG Y L P EC P V+G FV L+ + D
Sbjct: 209 VISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLGYDSHHFVPLVTLKDSGP 268
Query: 114 KFARLISFNRNVPTFNLLRSQILVD 40
+ + NR+ F L+ L D
Sbjct: 269 EIRAVPLVNRDRGRFEDLKVHFLTD 293
>AL357060-4|CAH72937.1| 790|Homo sapiens tumor necrosis factor,
alpha-induced protein 3 protein.
Length = 790
Score = 30.7 bits (66), Expect = 4.1
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = -1
Query: 285 LVGDKLFVLGVVGGFISPSRKGGKYPTLGLPEGECVGLPSVIG---SIFVNLLYVYDLAT 115
++ DK+ G +P + GG Y L P EC P V+G FV L+ + D
Sbjct: 209 VISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLGYDSHHFVPLVTLKDSGP 268
Query: 114 KFARLISFNRNVPTFNLLRSQILVD 40
+ + NR+ F L+ L D
Sbjct: 269 EIRAVPLVNRDRGRFEDLKVHFLTD 293
>AL157444-1|CAB75664.1| 636|Homo sapiens hypothetical protein
protein.
Length = 636
Score = 30.7 bits (66), Expect = 4.1
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = -1
Query: 285 LVGDKLFVLGVVGGFISPSRKGGKYPTLGLPEGECVGLPSVIG---SIFVNLLYVYDLAT 115
++ DK+ G +P + GG Y L P EC P V+G FV L+ + D
Sbjct: 55 VISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLGYDSHHFVPLVTLKDSGP 114
Query: 114 KFARLISFNRNVPTFNLLRSQILVD 40
+ + NR+ F L+ L D
Sbjct: 115 EIRAVPLVNRDRGRFEDLKVHFLTD 139
>U69263-1|AAC51260.2| 956|Homo sapiens matrilin-2 precursor protein.
Length = 956
Score = 29.5 bits (63), Expect = 9.4
Identities = 14/57 (24%), Positives = 32/57 (56%)
Frame = +2
Query: 362 NISMHQQALYNQQSTYTNIPTSPNISYSTKPNGPPIEDLFDTIKSNEPSVNKSLYND 532
N ++ + L+ + + + ++ +S+STKP+G P+E+ D K + ++L N+
Sbjct: 877 NFAVQHRYLFEEDNL---LRSTQKLSHSTKPSGSPLEEKHDQCKCENLIMFQNLANE 930
>BC016394-1|AAH16394.1| 715|Homo sapiens MATN2 protein protein.
Length = 715
Score = 29.5 bits (63), Expect = 9.4
Identities = 14/57 (24%), Positives = 32/57 (56%)
Frame = +2
Query: 362 NISMHQQALYNQQSTYTNIPTSPNISYSTKPNGPPIEDLFDTIKSNEPSVNKSLYND 532
N ++ + L+ + + + ++ +S+STKP+G P+E+ D K + ++L N+
Sbjct: 636 NFAVQHRYLFEEDNL---LRSTQKLSHSTKPSGSPLEEKHDQCKCENLIMFQNLANE 689
>AY358895-1|AAQ89254.1| 915|Homo sapiens MATN2 protein.
Length = 915
Score = 29.5 bits (63), Expect = 9.4
Identities = 14/57 (24%), Positives = 32/57 (56%)
Frame = +2
Query: 362 NISMHQQALYNQQSTYTNIPTSPNISYSTKPNGPPIEDLFDTIKSNEPSVNKSLYND 532
N ++ + L+ + + + ++ +S+STKP+G P+E+ D K + ++L N+
Sbjct: 836 NFAVQHRYLFEEDNL---LRSTQKLSHSTKPSGSPLEEKHDQCKCENLIMFQNLANE 889
>AL833931-1|CAD38787.1| 1016|Homo sapiens hypothetical protein
protein.
Length = 1016
Score = 29.5 bits (63), Expect = 9.4
Identities = 14/57 (24%), Positives = 32/57 (56%)
Frame = +2
Query: 362 NISMHQQALYNQQSTYTNIPTSPNISYSTKPNGPPIEDLFDTIKSNEPSVNKSLYND 532
N ++ + L+ + + + ++ +S+STKP+G P+E+ D K + ++L N+
Sbjct: 937 NFAVQHRYLFEEDNL---LRSTQKLSHSTKPSGSPLEEKHDQCKCENLIMFQNLANE 990
>AK027775-1|BAB55358.1| 537|Homo sapiens protein ( Homo sapiens
cDNA FLJ14869 fis, clone PLACE1002474, moderately
similar to Mus musculus matrilin-2 precursor mRNA. ).
Length = 537
Score = 29.5 bits (63), Expect = 9.4
Identities = 14/57 (24%), Positives = 32/57 (56%)
Frame = +2
Query: 362 NISMHQQALYNQQSTYTNIPTSPNISYSTKPNGPPIEDLFDTIKSNEPSVNKSLYND 532
N ++ + L+ + + + ++ +S+STKP+G P+E+ D K + ++L N+
Sbjct: 458 NFAVQHRYLFEEDNL---LRSTQKLSHSTKPSGSPLEEKHDQCKCENLIMFQNLANE 511
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,614,215
Number of Sequences: 237096
Number of extensions: 1864500
Number of successful extensions: 4403
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 4105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4392
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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