Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0983
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81119-3|CAB03334.1|  550|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z46996-1|CAA87099.1|  472|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical ...    29   3.3  
AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical ...    28   4.4  
U55854-1|AAA98010.2|  418|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z81119-3|CAB03334.1|  550|Caenorhabditis elegans Hypothetical
           protein T10H4.4 protein.
          Length = 550

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 83  LRLKEIKRANLVAKSYTYKRFTKMEPMTLGSPTHSPS 193
           L  K+  R N +    TYK+ T MEP+T+  P+ + S
Sbjct: 24  LEWKKPTRRNDIEFIVTYKKITDMEPVTIKKPSTAVS 60


>Z46996-1|CAA87099.1|  472|Caenorhabditis elegans Hypothetical
           protein C34C12.1 protein.
          Length = 472

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +2

Query: 56  LLSKL-KVGTLRLKEIKRANLV---AKSYTYKRFTKMEPMTLGSPTHSP 190
           LL +L K+G L+ K  KR  L    A + T +RFTK++ M  GS    P
Sbjct: 180 LLGRLSKLGLLKWKMSKREGLYLYHASNLTRRRFTKLKQMLRGSGCIDP 228


>AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical
           protein Y47H9C.9 protein.
          Length = 829

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +2

Query: 56  LLSKL-KVGTLRLKEIKRANLV---AKSYTYKRFTKMEPMTLGSPTHSP 190
           LL +L K+G L+ K  KR  L    A + T +RFTK++ M  GS    P
Sbjct: 175 LLGRLSKLGLLKWKMSKREGLYLYHASNLTRRRFTKLKQMLRGSGCIDP 223


>AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical
           protein Y46C8AL.2 protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +2

Query: 110 NLVAKSYTYKRFTKMEPMTLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLSPT 283
           N    SY  +  TK  P T+ S   +P+   +    P  +      PTTP T   +PT
Sbjct: 139 NYFVCSYDSRWATKPTPSTMKSTPTTPTTIKSTPTTPTTMKSTPTTPTTPTTMKSTPT 196


>U55854-1|AAA98010.2|  418|Caenorhabditis elegans Hypothetical
           protein C04G6.4 protein.
          Length = 418

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 164 TLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLSP 280
           T G    S    P+V  +PP     +  P  PR  S+SP
Sbjct: 44  TTGEDVKSKDAQPSVTPVPPPTFNPVPNPFAPRPKSVSP 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,363,262
Number of Sequences: 27780
Number of extensions: 290255
Number of successful extensions: 880
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)