Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0982
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    39   4e-04
SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...    33   0.020
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    28   0.76 
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    27   1.7  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   2.3  
SPBC3B9.18c |vma7||V-type ATPase subunit F |Schizosaccharomyces ...    25   5.3  
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    25   9.3  

>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 2   SQSNINLAGSHCGVSIGEDGPSQMGLEDLAMFRTVPTATVFYPSDAVSTERA 157
           + S +    +H  + +GEDGP+   +E  A FR +P    + P+D   T  A
Sbjct: 462 NNSRVIYVATHDSIGLGEDGPTHQPIETFAHFRAMPNINCWRPADGNETSAA 513


>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score = 33.5 bits (73), Expect = 0.020
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = +2

Query: 236 DEVFKVGQAKVLRQSAKDRVLLIGAGITL-HXXXXXXXXXXXXGVEARVLDPFTIKPLDE 412
           D V   G AKV R   KD + ++G  I++              GVEA V++  +I+PLD 
Sbjct: 225 DFVLPFGLAKVERPG-KD-ITIVGESISVVTALEAADKLKADYGVEAEVINLRSIRPLDI 282

Query: 413 AAVLENARAAEGRILVVEDHYQAGGVGEAVLSAV 514
             +  + +    RI+ V+  Y   G+G  + + +
Sbjct: 283 NTIAASVKKT-NRIVTVDQAYSQHGIGSEIAAQI 315


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +3

Query: 114 LLSSTRLMQSLQSVQ*NWQPTLEASVTSELLDPTRLSCIPMMKYSRLDRPK 266
           L S  R   S  S+  +W    E SV   L  P+  S   + KYSR +  K
Sbjct: 369 LFSMKRPSSSSSSLSGSWHGDTENSVKQSLASPSEASLPNLSKYSRKNAKK 419


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +2

Query: 173 NTRGICYIRTSRPNTAILYPNDEVFKVGQAKVL 271
           N +G+C + T+   TAI++P+    KVGQ ++L
Sbjct: 130 NPKGLCAMVTTVEKTAIVFPSR---KVGQLQIL 159


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 67  SDGTGGPCHVPYSAYCYCLL 126
           SDGTG P  +  S YC C +
Sbjct: 473 SDGTGSPQSLEVSFYCLCCI 492


>SPBC3B9.18c |vma7||V-type ATPase subunit F |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 120

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 371 ARVLDPFTIKPLDEAAVLENARAAEGRILVVEDHYQA 481
           A   D +T K  D A VL N  AAE     +E+H QA
Sbjct: 53  AEAFDDYTTKRKDIAIVLINQFAAERIRDRIENHVQA 89


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 18/60 (30%), Positives = 23/60 (38%)
 Frame = -3

Query: 295 HSVLCGLTEYFGLSNLEYFIIGIQDSRVGSRSSDVTDASSVGCQFYCTLCRDCIRRVEDS 116
           +S+ CGL   FG+ +  YF  G     +  R    T          CTL   CI R   S
Sbjct: 282 NSLQCGLM--FGVLSTPYFFCGAWAGAMVDRRGSRTIGKRAYAILGCTLFLLCIPRTNTS 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,856
Number of Sequences: 5004
Number of extensions: 37594
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)