Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0982
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485... 58 4e-09
05_04_0284 - 19813179-19813340,19813464-19813748,19813850-198141... 50 2e-06
06_01_0237 - 1808203-1809159,1809246-1809399,1809488-1809636,180... 40 0.001
04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816... 38 0.005
06_01_0313 - 2250312-2250516,2250585-2250610,2250792-2251076,225... 36 0.020
12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812 33 0.14
09_04_0141 + 15036249-15036339,15036834-15037768,15037968-15038081 33 0.14
03_05_0477 + 24707460-24707553,24707644-24707711,24707857-247079... 33 0.14
06_03_0570 - 22363197-22363588,22363755-22366782 30 1.3
01_06_1097 + 34507376-34507395,34509380-34511214,34511263-345115... 29 2.3
12_02_1116 + 26189651-26190544 29 3.1
03_01_0351 - 2758646-2759518 29 3.1
11_06_0754 - 26935647-26937780,26940890-26941827 28 4.1
02_04_0138 - 20144653-20144685,20144992-20145081,20145405-201454... 28 4.1
06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053 28 5.4
03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602... 28 5.4
12_02_0347 + 17808819-17809386,17809920-17810005,17810596-17810628 27 7.1
01_06_0141 - 26905855-26906928 27 7.1
08_02_1125 + 24488073-24488244,24488358-24488398,24488621-244888... 27 9.4
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 27 9.4
02_02_0235 + 8114606-8114806,8116530-8116692,8116785-8116887,811... 27 9.4
>07_01_0646 +
4853546-4853623,4853732-4855357,4855467-4855751,
4856131-4856277
Length = 711
Score = 58.0 bits (134), Expect = 4e-09
Identities = 51/164 (31%), Positives = 71/164 (43%), Gaps = 6/164 (3%)
Frame = +2
Query: 47 IGEDGPSQMGLEDLAMFRTVPTATVFYPSDAVSTERAVELAA--NTRGICYIRTSRPN-- 214
+G DGP+ G D+A +P V P+D V AA + R C+ R R N
Sbjct: 496 VGADGPTHCGAFDVAYMACLPNMVVMAPADEAELMHMVATAAAIDDRPSCF-RFPRGNGI 554
Query: 215 TAILYPNDE--VFKVGQAKVLRQSAKDRVLLIGAGITLHXXXXXXXXXXXXGVEARVLDP 388
A+L PN + +VG+ +VL +RV L+G G + G+ V D
Sbjct: 555 GAVLPPNHKGTPLEVGKGRVL--VGGNRVALLGYGTMVQACMKAAEALKEHGIYVTVADA 612
Query: 389 FTIKPLDEAAVLENARAAEGRILVVEDHYQAGGVGEAVLSAVSL 520
KPLD + E AAE +LV + GG G V +SL
Sbjct: 613 RFCKPLDTGLIRE--LAAEHEVLVTVEEGSIGGFGSHVAHYLSL 654
>05_04_0284 - 19813179-19813340,19813464-19813748,19813850-19814131,
19814224-19814531,19814654-19814927,19815807-19816175,
19816372-19816434,19817495-19817789,19817818-19818008,
19818123-19818428,19818516-19818638
Length = 885
Score = 49.6 bits (113), Expect = 2e-06
Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 6/164 (3%)
Frame = +2
Query: 47 IGEDGPSQMGLEDLAMFRTVPTATVFYPSDAVSTERAVELAA--NTRGICYIRTSRPN-- 214
+G DGP+ G D+ +P V PSD V AA + R C+ R R N
Sbjct: 665 VGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELCHMVATAAAIDDRPSCF-RYPRGNGI 723
Query: 215 TAILYPNDE--VFKVGQAKVLRQSAKDRVLLIGAGITLHXXXXXXXXXXXXGVEARVLDP 388
L PN + +VG+ +VL + +RV L+G G + G++ V D
Sbjct: 724 GVPLPPNYKGVPLEVGKGRVLLEG--ERVALLGYGSAVQYCLAAASLVERHGLKVTVADA 781
Query: 389 FTIKPLDEAAVLENARAAEGRILVVEDHYQAGGVGEAVLSAVSL 520
KPLD+ + A + E +L+ + GG G V ++L
Sbjct: 782 RFCKPLDQTLIRRLASSHE--VLLTVEEGSIGGFGSHVAQFMAL 823
>06_01_0237 -
1808203-1809159,1809246-1809399,1809488-1809636,
1809715-1809997,1810087-1810192,1810293-1810383,
1810779-1811270
Length = 743
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 29 SHCGVSIGEDGPSQMGLEDLAMFRTVPTATVFYPSDAVSTERAVELAANTR 181
+H + +GEDGP+ +E L FR +P + P+D T A ++A R
Sbjct: 541 THDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKIAVLNR 591
>04_03_0092 +
11079185-11079589,11081319-11081409,11081507-11081612,
11081694-11081976,11082062-11082210,11083582-11083735,
11083837-11084793
Length = 714
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 8 SNINLAGSHCGVSIGEDGPSQMGLEDLAMFRTVPTATVFYPSDAVSTERAVELAANTR 181
S + +H + +GEDGP+ +E L R +P + P+D T A ++A R
Sbjct: 505 SRVIFVMTHDSIGLGEDGPTHQPVEQLFSLRAMPNILMLRPADGNETSGAYKIAVLNR 562
>06_01_0313 -
2250312-2250516,2250585-2250610,2250792-2251076,
2251289-2251567,2251817-2252121,2252581-2252860,
2253209-2253475
Length = 548
Score = 35.9 bits (79), Expect = 0.020
Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 4/162 (2%)
Frame = +2
Query: 47 IGEDGPSQMGLEDLAMFRTVPTATVFYPSDAVSTERAVELAA--NTRGIC--YIRTSRPN 214
+G +GP+ G D+ +P V PS+ V AA R IC Y + +
Sbjct: 306 VGSEGPTNSGPFDITFMSCLPNMIVMSPSNEDELIDMVATAAMVEDRPICFRYPKGAIVG 365
Query: 215 TAILYPNDEVFKVGQAKVLRQSAKDRVLLIGAGITLHXXXXXXXXXXXXGVEARVLDPFT 394
T+ ++G+ ++L + + + +G G + G++A V +
Sbjct: 366 TSGTLAYGNPLEIGKGEILAEGKE--IAFLGYGDVVQRCLIARSLLFNFGIQATVANARF 423
Query: 395 IKPLDEAAVLENARAAEGRILVVEDHYQAGGVGEAVLSAVSL 520
KPLD L + L+ + GG G V +SL
Sbjct: 424 CKPLD--IDLIRMLCQQHDFLITVEEGTVGGFGSHVSQFISL 463
>12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812
Length = 376
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +2
Query: 362 GVEARVLDPFTIKPLDEAAVLENARAAEGRILVVEDHYQAGGVGEAVLSAV 514
G + V+D ++KP D + N+ R+L+VE+ + GG+G ++ SA+
Sbjct: 279 GYDPEVIDIRSLKPFD-LHTIGNSIKKTHRVLIVEECMRTGGIGASLRSAI 328
>09_04_0141 + 15036249-15036339,15036834-15037768,15037968-15038081
Length = 379
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 208 SRSSDVTDASSVGCQFYCTLCRDCIRRVEDSSSRHCT 98
SR + T +SS +FYCT+C + + +E + CT
Sbjct: 169 SRGAAATASSSASSEFYCTICMETVDAIERFAIPGCT 205
>03_05_0477 +
24707460-24707553,24707644-24707711,24707857-24707903,
24709188-24710160
Length = 393
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +2
Query: 362 GVEARVLDPFTIKPLDEAAVLENARAAEGRILVVEDHYQAGGVGEAVLSAV 514
G + V+D ++KP D + N+ R+L+VE+ + GG+G ++ SA+
Sbjct: 296 GYDPEVIDIRSLKPFD-LHTIGNSIKKTHRVLIVEECMRTGGIGASLRSAI 345
>06_03_0570 - 22363197-22363588,22363755-22366782
Length = 1139
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -3
Query: 502 HRLADTSRL--IMIFNNKYSSLSSPSILQNCSLVQWLD 395
H L S L +++ NN + P +L NCS +QWLD
Sbjct: 220 HSLGSVSSLTYVVLANNSLTG-GIPPVLANCSSLQWLD 256
>01_06_1097 +
34507376-34507395,34509380-34511214,34511263-34511598,
34511800-34513691
Length = 1360
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 368 EARVLDPFTIKPLDEAAVLENARAAEGRILVVEDHYQAG 484
E RV++ F ++ EA + ++ AA V+E+H++ G
Sbjct: 839 EERVVENFNVQEKHEAVIFTDSDAALTGFHVIEEHFEVG 877
>12_02_1116 + 26189651-26190544
Length = 297
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = -2
Query: 371 PPHLLFSILQQQQVLRAA*FRLRSTTLGPLRTDGVLWPVQP 249
PPHL FS QQQ AA R G L+++ LWP P
Sbjct: 201 PPHLAFSQEQQQHATVAAFDR------GTLQSNASLWPPPP 235
>03_01_0351 - 2758646-2759518
Length = 290
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 204 LDPTRLSCIPMMKYSRLDRPKYSVSPQRTECC*SE 308
LDP ++ +P++KY R K S SPQ C SE
Sbjct: 85 LDPDVVAALPVVKYRRAASGK-SASPQECAVCLSE 118
>11_06_0754 - 26935647-26937780,26940890-26941827
Length = 1023
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Frame = -3
Query: 310 GSDQQHSVLCGLTEYFGLSNLEYFIIGIQDSRVGSRSSDVTDASSVGCQFYC-TLCRDCI 134
G DQ+ ++ G+ +GL + I G + R+ ++ G C ++ C+
Sbjct: 915 GVDQESTIPVGIQYLYGLKEISVKIGGADPEKYDRRAEELAFMIDSGLHDRCMSITLQCV 974
Query: 133 RRV----EDSSSRHCTEHGKVLQSHL 68
R++ ED SS E K+ Q +
Sbjct: 975 RQMFDFNEDKSSLTHEEQRKLKQQEI 1000
>02_04_0138 -
20144653-20144685,20144992-20145081,20145405-20145489,
20146859-20146922,20149388-20149628
Length = 170
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -3
Query: 238 IIGIQDSRVGSRSSDVTDASSVGCQFYCTLCRDCIRRVED--SSSRHCT 98
+ + D V + + D S C + + C++R+ED + +HCT
Sbjct: 99 VASMSDEEVSDPKALLEDRSKAKCVYQWYEYQKCVKRIEDDETGQKHCT 147
>06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053
Length = 1613
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 271 PSVRKGPSVVDRSRNHAARSTCCC 342
P +KG ++ +RN +TCCC
Sbjct: 974 PDNKKGSRIIVTTRNEDVANTCCC 997
>03_05_0136 +
21158917-21159939,21160183-21160241,21160259-21160294,
21160345-21160387,21160582-21160698,21162090-21162179,
21162329-21162436,21162547-21162588
Length = 505
Score = 27.9 bits (59), Expect = 5.4
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = -1
Query: 312 PAPINNTRSFAD*RSTLACPTLNTSSLGYKIAVLGLEVLM*QMPRVLAANSTARSVETAS 133
PAP +T S + +T L SL A L + ++PR A++ AR V A
Sbjct: 81 PAPAASTPSSSSSVATTLADHLAEDSLDAPPAALSRQRSCTELPRFADADAEARKVVVAR 140
Query: 132 DG*KTVAVG 106
G A+G
Sbjct: 141 SGGHASAIG 149
>12_02_0347 + 17808819-17809386,17809920-17810005,17810596-17810628
Length = 228
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 380 LDPFTIKPLDEAAVLENARAAEGRILVVEDHYQAGGVGEA 499
+DP + P +E L + +G+ LV++ G GEA
Sbjct: 1 MDPSAMNPSEEGKALGMDPSGQGKALVIQPAVNPSGEGEA 40
>01_06_0141 - 26905855-26906928
Length = 357
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -2
Query: 455 VFFPQQPE-HSPELQPRPMA-*W*TGPTHEPP 366
+F PQ P SP+L P PMA + T TH PP
Sbjct: 117 LFSPQIPNLSSPKLSPTPMAGRYYTPQTHPPP 148
>08_02_1125 +
24488073-24488244,24488358-24488398,24488621-24488889,
24489061-24489157,24489407-24489753,24489816-24490173,
24490319-24490894,24491374-24491649
Length = 711
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 18 TLPVHTAESASERTVRVRWDWRTLPCSVQCLLLLS 122
T+ A SAS R R RW WRT +V LL+ S
Sbjct: 3 TMASAAAASASARRWRWRWKWRTRD-AVLALLIAS 36
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/81 (24%), Positives = 34/81 (41%)
Frame = +3
Query: 78 WRTLPCSVQCLLLLSSTRLMQSLQSVQ*NWQPTLEASVTSELLDPTRLSCIPMMKYSRLD 257
W + L MQ L+ VQ N +S+ L DP + + +M ++
Sbjct: 142 WTKIASDPTTRAYLEQPDFMQMLRDVQRN-----PSSLNMYLSDPRMMQVLGLMLNIKIQ 196
Query: 258 RPKYSVSPQRTECC*SEPESR 320
RP+ S S Q + S+P+ +
Sbjct: 197 RPEASESSQPSSSPPSQPQEQ 217
>02_02_0235 +
8114606-8114806,8116530-8116692,8116785-8116887,
8118584-8118650,8119923-8120486
Length = 365
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 261 PKYSVSPQRTECC*SEP 311
P Y + Q TECC SEP
Sbjct: 123 PSYRCAEQETECCSSEP 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,982,755
Number of Sequences: 37544
Number of extensions: 289308
Number of successful extensions: 915
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -