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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0982
         (531 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485...    58   4e-09
05_04_0284 - 19813179-19813340,19813464-19813748,19813850-198141...    50   2e-06
06_01_0237 - 1808203-1809159,1809246-1809399,1809488-1809636,180...    40   0.001
04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816...    38   0.005
06_01_0313 - 2250312-2250516,2250585-2250610,2250792-2251076,225...    36   0.020
12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812     33   0.14 
09_04_0141 + 15036249-15036339,15036834-15037768,15037968-15038081     33   0.14 
03_05_0477 + 24707460-24707553,24707644-24707711,24707857-247079...    33   0.14 
06_03_0570 - 22363197-22363588,22363755-22366782                       30   1.3  
01_06_1097 + 34507376-34507395,34509380-34511214,34511263-345115...    29   2.3  
12_02_1116 + 26189651-26190544                                         29   3.1  
03_01_0351 - 2758646-2759518                                           29   3.1  
11_06_0754 - 26935647-26937780,26940890-26941827                       28   4.1  
02_04_0138 - 20144653-20144685,20144992-20145081,20145405-201454...    28   4.1  
06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053           28   5.4  
03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602...    28   5.4  
12_02_0347 + 17808819-17809386,17809920-17810005,17810596-17810628     27   7.1  
01_06_0141 - 26905855-26906928                                         27   7.1  
08_02_1125 + 24488073-24488244,24488358-24488398,24488621-244888...    27   9.4  
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    27   9.4  
02_02_0235 + 8114606-8114806,8116530-8116692,8116785-8116887,811...    27   9.4  

>07_01_0646 +
           4853546-4853623,4853732-4855357,4855467-4855751,
           4856131-4856277
          Length = 711

 Score = 58.0 bits (134), Expect = 4e-09
 Identities = 51/164 (31%), Positives = 71/164 (43%), Gaps = 6/164 (3%)
 Frame = +2

Query: 47  IGEDGPSQMGLEDLAMFRTVPTATVFYPSDAVSTERAVELAA--NTRGICYIRTSRPN-- 214
           +G DGP+  G  D+A    +P   V  P+D       V  AA  + R  C+ R  R N  
Sbjct: 496 VGADGPTHCGAFDVAYMACLPNMVVMAPADEAELMHMVATAAAIDDRPSCF-RFPRGNGI 554

Query: 215 TAILYPNDE--VFKVGQAKVLRQSAKDRVLLIGAGITLHXXXXXXXXXXXXGVEARVLDP 388
            A+L PN +    +VG+ +VL     +RV L+G G  +             G+   V D 
Sbjct: 555 GAVLPPNHKGTPLEVGKGRVL--VGGNRVALLGYGTMVQACMKAAEALKEHGIYVTVADA 612

Query: 389 FTIKPLDEAAVLENARAAEGRILVVEDHYQAGGVGEAVLSAVSL 520
              KPLD   + E   AAE  +LV  +    GG G  V   +SL
Sbjct: 613 RFCKPLDTGLIRE--LAAEHEVLVTVEEGSIGGFGSHVAHYLSL 654


>05_04_0284 - 19813179-19813340,19813464-19813748,19813850-19814131,
            19814224-19814531,19814654-19814927,19815807-19816175,
            19816372-19816434,19817495-19817789,19817818-19818008,
            19818123-19818428,19818516-19818638
          Length = 885

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 6/164 (3%)
 Frame = +2

Query: 47   IGEDGPSQMGLEDLAMFRTVPTATVFYPSDAVSTERAVELAA--NTRGICYIRTSRPN-- 214
            +G DGP+  G  D+     +P   V  PSD       V  AA  + R  C+ R  R N  
Sbjct: 665  VGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELCHMVATAAAIDDRPSCF-RYPRGNGI 723

Query: 215  TAILYPNDE--VFKVGQAKVLRQSAKDRVLLIGAGITLHXXXXXXXXXXXXGVEARVLDP 388
               L PN +    +VG+ +VL +   +RV L+G G  +             G++  V D 
Sbjct: 724  GVPLPPNYKGVPLEVGKGRVLLEG--ERVALLGYGSAVQYCLAAASLVERHGLKVTVADA 781

Query: 389  FTIKPLDEAAVLENARAAEGRILVVEDHYQAGGVGEAVLSAVSL 520
               KPLD+  +   A + E  +L+  +    GG G  V   ++L
Sbjct: 782  RFCKPLDQTLIRRLASSHE--VLLTVEEGSIGGFGSHVAQFMAL 823


>06_01_0237 -
           1808203-1809159,1809246-1809399,1809488-1809636,
           1809715-1809997,1810087-1810192,1810293-1810383,
           1810779-1811270
          Length = 743

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +2

Query: 29  SHCGVSIGEDGPSQMGLEDLAMFRTVPTATVFYPSDAVSTERAVELAANTR 181
           +H  + +GEDGP+   +E L  FR +P   +  P+D   T  A ++A   R
Sbjct: 541 THDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKIAVLNR 591


>04_03_0092 +
           11079185-11079589,11081319-11081409,11081507-11081612,
           11081694-11081976,11082062-11082210,11083582-11083735,
           11083837-11084793
          Length = 714

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 8   SNINLAGSHCGVSIGEDGPSQMGLEDLAMFRTVPTATVFYPSDAVSTERAVELAANTR 181
           S +    +H  + +GEDGP+   +E L   R +P   +  P+D   T  A ++A   R
Sbjct: 505 SRVIFVMTHDSIGLGEDGPTHQPVEQLFSLRAMPNILMLRPADGNETSGAYKIAVLNR 562


>06_01_0313 -
           2250312-2250516,2250585-2250610,2250792-2251076,
           2251289-2251567,2251817-2252121,2252581-2252860,
           2253209-2253475
          Length = 548

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 4/162 (2%)
 Frame = +2

Query: 47  IGEDGPSQMGLEDLAMFRTVPTATVFYPSDAVSTERAVELAA--NTRGIC--YIRTSRPN 214
           +G +GP+  G  D+     +P   V  PS+       V  AA    R IC  Y + +   
Sbjct: 306 VGSEGPTNSGPFDITFMSCLPNMIVMSPSNEDELIDMVATAAMVEDRPICFRYPKGAIVG 365

Query: 215 TAILYPNDEVFKVGQAKVLRQSAKDRVLLIGAGITLHXXXXXXXXXXXXGVEARVLDPFT 394
           T+         ++G+ ++L +  +  +  +G G  +             G++A V +   
Sbjct: 366 TSGTLAYGNPLEIGKGEILAEGKE--IAFLGYGDVVQRCLIARSLLFNFGIQATVANARF 423

Query: 395 IKPLDEAAVLENARAAEGRILVVEDHYQAGGVGEAVLSAVSL 520
            KPLD    L      +   L+  +    GG G  V   +SL
Sbjct: 424 CKPLD--IDLIRMLCQQHDFLITVEEGTVGGFGSHVSQFISL 463


>12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812
          Length = 376

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = +2

Query: 362 GVEARVLDPFTIKPLDEAAVLENARAAEGRILVVEDHYQAGGVGEAVLSAV 514
           G +  V+D  ++KP D    + N+     R+L+VE+  + GG+G ++ SA+
Sbjct: 279 GYDPEVIDIRSLKPFD-LHTIGNSIKKTHRVLIVEECMRTGGIGASLRSAI 328


>09_04_0141 + 15036249-15036339,15036834-15037768,15037968-15038081
          Length = 379

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 208 SRSSDVTDASSVGCQFYCTLCRDCIRRVEDSSSRHCT 98
           SR +  T +SS   +FYCT+C + +  +E  +   CT
Sbjct: 169 SRGAAATASSSASSEFYCTICMETVDAIERFAIPGCT 205


>03_05_0477 +
           24707460-24707553,24707644-24707711,24707857-24707903,
           24709188-24710160
          Length = 393

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = +2

Query: 362 GVEARVLDPFTIKPLDEAAVLENARAAEGRILVVEDHYQAGGVGEAVLSAV 514
           G +  V+D  ++KP D    + N+     R+L+VE+  + GG+G ++ SA+
Sbjct: 296 GYDPEVIDIRSLKPFD-LHTIGNSIKKTHRVLIVEECMRTGGIGASLRSAI 345


>06_03_0570 - 22363197-22363588,22363755-22366782
          Length = 1139

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -3

Query: 502 HRLADTSRL--IMIFNNKYSSLSSPSILQNCSLVQWLD 395
           H L   S L  +++ NN  +    P +L NCS +QWLD
Sbjct: 220 HSLGSVSSLTYVVLANNSLTG-GIPPVLANCSSLQWLD 256


>01_06_1097 +
           34507376-34507395,34509380-34511214,34511263-34511598,
           34511800-34513691
          Length = 1360

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 368 EARVLDPFTIKPLDEAAVLENARAAEGRILVVEDHYQAG 484
           E RV++ F ++   EA +  ++ AA     V+E+H++ G
Sbjct: 839 EERVVENFNVQEKHEAVIFTDSDAALTGFHVIEEHFEVG 877


>12_02_1116 + 26189651-26190544
          Length = 297

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -2

Query: 371 PPHLLFSILQQQQVLRAA*FRLRSTTLGPLRTDGVLWPVQP 249
           PPHL FS  QQQ    AA  R      G L+++  LWP  P
Sbjct: 201 PPHLAFSQEQQQHATVAAFDR------GTLQSNASLWPPPP 235


>03_01_0351 - 2758646-2759518
          Length = 290

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 204 LDPTRLSCIPMMKYSRLDRPKYSVSPQRTECC*SE 308
           LDP  ++ +P++KY R    K S SPQ    C SE
Sbjct: 85  LDPDVVAALPVVKYRRAASGK-SASPQECAVCLSE 118


>11_06_0754 - 26935647-26937780,26940890-26941827
          Length = 1023

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
 Frame = -3

Query: 310  GSDQQHSVLCGLTEYFGLSNLEYFIIGIQDSRVGSRSSDVTDASSVGCQFYC-TLCRDCI 134
            G DQ+ ++  G+   +GL  +   I G    +   R+ ++      G    C ++   C+
Sbjct: 915  GVDQESTIPVGIQYLYGLKEISVKIGGADPEKYDRRAEELAFMIDSGLHDRCMSITLQCV 974

Query: 133  RRV----EDSSSRHCTEHGKVLQSHL 68
            R++    ED SS    E  K+ Q  +
Sbjct: 975  RQMFDFNEDKSSLTHEEQRKLKQQEI 1000


>02_04_0138 -
           20144653-20144685,20144992-20145081,20145405-20145489,
           20146859-20146922,20149388-20149628
          Length = 170

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -3

Query: 238 IIGIQDSRVGSRSSDVTDASSVGCQFYCTLCRDCIRRVED--SSSRHCT 98
           +  + D  V    + + D S   C +     + C++R+ED  +  +HCT
Sbjct: 99  VASMSDEEVSDPKALLEDRSKAKCVYQWYEYQKCVKRIEDDETGQKHCT 147


>06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053
          Length = 1613

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 271  PSVRKGPSVVDRSRNHAARSTCCC 342
            P  +KG  ++  +RN    +TCCC
Sbjct: 974  PDNKKGSRIIVTTRNEDVANTCCC 997


>03_05_0136 +
           21158917-21159939,21160183-21160241,21160259-21160294,
           21160345-21160387,21160582-21160698,21162090-21162179,
           21162329-21162436,21162547-21162588
          Length = 505

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = -1

Query: 312 PAPINNTRSFAD*RSTLACPTLNTSSLGYKIAVLGLEVLM*QMPRVLAANSTARSVETAS 133
           PAP  +T S +   +T     L   SL    A L  +    ++PR   A++ AR V  A 
Sbjct: 81  PAPAASTPSSSSSVATTLADHLAEDSLDAPPAALSRQRSCTELPRFADADAEARKVVVAR 140

Query: 132 DG*KTVAVG 106
            G    A+G
Sbjct: 141 SGGHASAIG 149


>12_02_0347 + 17808819-17809386,17809920-17810005,17810596-17810628
          Length = 228

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 380 LDPFTIKPLDEAAVLENARAAEGRILVVEDHYQAGGVGEA 499
           +DP  + P +E   L    + +G+ LV++      G GEA
Sbjct: 1   MDPSAMNPSEEGKALGMDPSGQGKALVIQPAVNPSGEGEA 40


>01_06_0141 - 26905855-26906928
          Length = 357

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 455 VFFPQQPE-HSPELQPRPMA-*W*TGPTHEPP 366
           +F PQ P   SP+L P PMA  + T  TH PP
Sbjct: 117 LFSPQIPNLSSPKLSPTPMAGRYYTPQTHPPP 148


>08_02_1125 +
           24488073-24488244,24488358-24488398,24488621-24488889,
           24489061-24489157,24489407-24489753,24489816-24490173,
           24490319-24490894,24491374-24491649
          Length = 711

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 18  TLPVHTAESASERTVRVRWDWRTLPCSVQCLLLLS 122
           T+    A SAS R  R RW WRT   +V  LL+ S
Sbjct: 3   TMASAAAASASARRWRWRWKWRTRD-AVLALLIAS 36


>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 20/81 (24%), Positives = 34/81 (41%)
 Frame = +3

Query: 78  WRTLPCSVQCLLLLSSTRLMQSLQSVQ*NWQPTLEASVTSELLDPTRLSCIPMMKYSRLD 257
           W  +         L     MQ L+ VQ N      +S+   L DP  +  + +M   ++ 
Sbjct: 142 WTKIASDPTTRAYLEQPDFMQMLRDVQRN-----PSSLNMYLSDPRMMQVLGLMLNIKIQ 196

Query: 258 RPKYSVSPQRTECC*SEPESR 320
           RP+ S S Q +    S+P+ +
Sbjct: 197 RPEASESSQPSSSPPSQPQEQ 217


>02_02_0235 +
           8114606-8114806,8116530-8116692,8116785-8116887,
           8118584-8118650,8119923-8120486
          Length = 365

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 261 PKYSVSPQRTECC*SEP 311
           P Y  + Q TECC SEP
Sbjct: 123 PSYRCAEQETECCSSEP 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,982,755
Number of Sequences: 37544
Number of extensions: 289308
Number of successful extensions: 915
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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