Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0982
(531 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48907| Best HMM Match : Transket_pyr (HMM E-Value=0) 224 3e-59
SB_24503| Best HMM Match : Transket_pyr (HMM E-Value=0) 125 1e-54
SB_6655| Best HMM Match : No HMM Matches (HMM E-Value=.) 155 2e-38
SB_34086| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_34878| Best HMM Match : 7tm_1 (HMM E-Value=6e-08) 28 4.1
SB_24649| Best HMM Match : DUF721 (HMM E-Value=1.9) 28 4.1
SB_53298| Best HMM Match : Keratin_B2 (HMM E-Value=3.9) 27 7.2
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_47272| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 27 9.5
SB_29145| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_48907| Best HMM Match : Transket_pyr (HMM E-Value=0)
Length = 548
Score = 224 bits (548), Expect = 3e-59
Identities = 106/171 (61%), Positives = 130/171 (76%)
Frame = +2
Query: 2 SQSNINLAGSHCGVSIGEDGPSQMGLEDLAMFRTVPTATVFYPSDAVSTERAVELAANTR 181
S S IN+ GSH G SIGEDG SQMGLEDLAMFR +P TVFYPSDAVS ERAVELAANT
Sbjct: 334 SDSTINIMGSHVGCSIGEDGASQMGLEDLAMFRALPNCTVFYPSDAVSCERAVELAANTT 393
Query: 182 GICYIRTSRPNTAILYPNDEVFKVGQAKVLRQSAKDRVLLIGAGITLHXXXXXXXXXXXX 361
G+ +IR SRP T ++Y N+E F +G+AK++RQSA D+VL+IGAG+TL
Sbjct: 394 GMTFIRASRPATPVIYGNEETFTIGKAKIVRQSADDKVLVIGAGVTLAEALKAADELASS 453
Query: 362 GVEARVLDPFTIKPLDEAAVLENARAAEGRILVVEDHYQAGGVGEAVLSAV 514
GV RV+DPFTIKPLD+ A++E+A+A G+++VVEDHY GG+GEAV AV
Sbjct: 454 GVSVRVMDPFTIKPLDKDAIVEHAKACGGKVVVVEDHYYEGGIGEAVCHAV 504
>SB_24503| Best HMM Match : Transket_pyr (HMM E-Value=0)
Length = 562
Score = 125 bits (301), Expect(2) = 1e-54
Identities = 57/89 (64%), Positives = 71/89 (79%)
Frame = +2
Query: 2 SQSNINLAGSHCGVSIGEDGPSQMGLEDLAMFRTVPTATVFYPSDAVSTERAVELAANTR 181
SQS++N GSH G SIGEDG SQM LED+AMFR +P + VFYPSDAV+ ERAVELAAN
Sbjct: 311 SQSSVNFVGSHVGCSIGEDGASQMALEDMAMFRALPGSVVFYPSDAVACERAVELAANYP 370
Query: 182 GICYIRTSRPNTAILYPNDEVFKVGQAKV 268
GI + R +RP++A++Y NDE F +G+AKV
Sbjct: 371 GITFTRATRPDSAVIYANDEPFAIGKAKV 399
Score = 105 bits (253), Expect(2) = 1e-54
Identities = 46/91 (50%), Positives = 65/91 (71%)
Frame = +2
Query: 242 VFKVGQAKVLRQSAKDRVLLIGAGITLHXXXXXXXXXXXXGVEARVLDPFTIKPLDEAAV 421
+F +G+AKV+RQS D VL+I AG+TL G+ R+LDPFT+KP+D+A +
Sbjct: 427 MFDIGKAKVVRQSEDDHVLVIAAGVTLDEAMKAANHLELEGIHVRILDPFTVKPIDKAGI 486
Query: 422 LENARAAEGRILVVEDHYQAGGVGEAVLSAV 514
+ NA+AA G+++VVEDHY GG+GEAV SA+
Sbjct: 487 VANAKAANGKVVVVEDHYYEGGLGEAVFSAI 517
>SB_6655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 155 bits (376), Expect = 2e-38
Identities = 87/168 (51%), Positives = 108/168 (64%), Gaps = 14/168 (8%)
Frame = +2
Query: 53 EDGPSQMGLEDLAMFRTVPTATVFYPSDAVSTERAVELAANTRGI--CYIRTSRP--NTA 220
EDG SQMGLEDLAMFR +P TVFYPSDAVS ERAVELAANT G C ++ P N
Sbjct: 2 EDGASQMGLEDLAMFRALPNCTVFYPSDAVSCERAVELAANTTGASHCGLKLMWPVINER 61
Query: 221 ILYPNDEVFKVGQ----------AKVLRQSAKDRVLLIGAGITLHXXXXXXXXXXXXGVE 370
+ G+ A+++RQSA D+VL+IGAG+TL GV
Sbjct: 62 SMCSGSPGHDRGRRFDQTNLRPMAEIVRQSADDKVLVIGAGVTLAEALKAADELASSGVS 121
Query: 371 ARVLDPFTIKPLDEAAVLENARAAEGRILVVEDHYQAGGVGEAVLSAV 514
RV+DPFTIKPLD+ A++E+A+A G+++VVEDHY GG+GEAV AV
Sbjct: 122 VRVMDPFTIKPLDKDAIVEHAKACGGKVVVVEDHYYEGGIGEAVCHAV 169
>SB_34086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 890
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 72 WDWRTLPCSVQCLLLLSSTRLMQSLQSVQ*NWQPTLEASVTSELLDP 212
+DW T PC +ST +M +Q+ PT + + ++ DP
Sbjct: 149 YDWETTPCDCSQTTHTTSTGVMAQIQTTAPENHPTQDQDLIEDISDP 195
>SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2051
Score = 30.7 bits (66), Expect = 0.77
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 105 CLLLLSSTRLMQSLQSVQ*NWQPTLEASVTSELLDPTRLSCIPM 236
CL L+S ++ + + VQ QP S +LDPT SC P+
Sbjct: 478 CLDLVSKSQSVSNFGVVQLFTQPHPPQSTCCAMLDPTSFSCTPL 521
>SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1390
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 9 PTLTLPVHTAESASERTVRVRWD 77
P+ + + TAE S R +RVRWD
Sbjct: 601 PSAEMKIKTAEDISSRKIRVRWD 623
>SB_34878| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)
Length = 1383
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = -3
Query: 211 GSRSSDVTDASSVGCQFYCTLCRDCIRRVEDSSSRHCTEHGKVLQSHLTRTVLSDADSAV 32
GSR D S + + + R R S+R CT QS +T+T+ D+AV
Sbjct: 1206 GSRYGDSASRSQISAVIH-GVSRHLDTRAPPISARPCTAMSTTQQSKITKTI---TDAAV 1261
Query: 31 *TGKV 17
TG V
Sbjct: 1262 ITGLV 1266
>SB_24649| Best HMM Match : DUF721 (HMM E-Value=1.9)
Length = 212
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = -3
Query: 211 GSRSSDVTDASSVGCQFYCTLCRDCIRRVEDSSSRHCTEHGKVLQSHLTRTVLSDADSAV 32
GSRS D S + + + R R S+R CT QS +T+T+ D+A
Sbjct: 35 GSRSGDSASRSRISAVIH-GVSRHLDTRAPPISARPCTAMSTTQQSKITKTI---TDAAF 90
Query: 31 *TGKV 17
TG V
Sbjct: 91 ITGLV 95
>SB_53298| Best HMM Match : Keratin_B2 (HMM E-Value=3.9)
Length = 269
Score = 27.5 bits (58), Expect = 7.2
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = -3
Query: 238 IIGIQDSRVGSRSSDVTDASSVGCQFYCTL---CRDCIRRVEDSSSRHCTEHGKVLQSHL 68
+ G + + GSRS D+ S Q + R R S+R CT QS +
Sbjct: 146 VAGGRTADQGSRSGDIASRSRT-VQISAVIHGVSRHLDTRAPPISARPCTAMSTTQQSKI 204
Query: 67 TRTVLSDADSAV*TGKV 17
T+T+ D+AV TG V
Sbjct: 205 TKTI---TDAAVITGLV 218
>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1190
Score = 27.1 bits (57), Expect = 9.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2
Query: 185 CLECWLPILLHA 150
C +CW PI+LHA
Sbjct: 776 CAQCWYPIVLHA 787
>SB_47272| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 737
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 92 MFRTVPTATVFYPSDAVSTERAVELAANTRGIC 190
+ R+ P T F+P+ AV+ + A++ GIC
Sbjct: 242 LLRSPPAGTEFHPAAAVTAKFAIQQIQQHGGIC 274
>SB_29145| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1090
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 46 HRRGRSESDGTGGPCHVPYSA 108
HRR + DG P HVPY++
Sbjct: 834 HRRLKQSRDGFATPSHVPYAS 854
>SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1185
Score = 27.1 bits (57), Expect = 9.5
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -3
Query: 262 GLSNLEYFIIGIQDSRVGSRSSDVTDASSVGCQFYCTLCRDCI--RRVEDSSSRHCTEHG 89
GLS E FI+ D+ SRSS +T +S T + + V SSS T G
Sbjct: 610 GLSGWENFIVSAPDNFFPSRSSTITGSSWSSSSTTTTKHVKTVNGKVVSSSSSTISTSSG 669
Query: 88 KVLQS 74
K + S
Sbjct: 670 KPMTS 674
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,696,443
Number of Sequences: 59808
Number of extensions: 311595
Number of successful extensions: 908
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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