BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0982 (531 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81055-1|CAB02889.1| 618|Caenorhabditis elegans Hypothetical pr... 216 9e-57 Z79695-1|CAB01970.1| 366|Caenorhabditis elegans Hypothetical pr... 35 0.042 U97007-8|AAB52293.1| 323|Caenorhabditis elegans Hypothetical pr... 27 6.3 U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa ... 27 6.3 U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 27 6.3 AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 27 6.3 >Z81055-1|CAB02889.1| 618|Caenorhabditis elegans Hypothetical protein F01G10.1 protein. Length = 618 Score = 216 bits (527), Expect = 9e-57 Identities = 98/172 (56%), Positives = 129/172 (75%) Frame = +2 Query: 2 SQSNINLAGSHCGVSIGEDGPSQMGLEDLAMFRTVPTATVFYPSDAVSTERAVELAANTR 181 S +N+ GSH GVSIGEDGPSQM LEDLA+FRT+P ATVFYP+DAVS ERA ELAANT+ Sbjct: 404 SFANLKCVGSHVGVSIGEDGPSQMALEDLAIFRTIPGATVFYPTDAVSAERATELAANTK 463 Query: 182 GICYIRTSRPNTAILYPNDEVFKVGQAKVLRQSAKDRVLLIGAGITLHXXXXXXXXXXXX 361 G+ +IRT RP +LY N+E F +GQAKV++QSA+D+++L+G+G+TL+ Sbjct: 464 GVVFIRTGRPALPVLYDNEEPFHIGQAKVVKQSAQDKIVLVGSGVTLYESLKAAEELEKE 523 Query: 362 GVEARVLDPFTIKPLDEAAVLENARAAEGRILVVEDHYQAGGVGEAVLSAVS 517 G+ A V+DPFTIKPLD + E+A GR++ EDHY AGG+GEAV +A++ Sbjct: 524 GIHATVIDPFTIKPLDGKTIAEHALKVGGRVVTTEDHYAAGGIGEAVSAALA 575 >Z79695-1|CAB01970.1| 366|Caenorhabditis elegans Hypothetical protein F27D4.5 protein. Length = 366 Score = 34.7 bits (76), Expect = 0.042 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 1/94 (1%) Frame = +2 Query: 236 DEVFKVGQAKVLRQSAKDRVLLIGAGITLHXXXXXXXXXXXX-GVEARVLDPFTIKPLDE 412 D +GQA+ +R S KD + L+ G +H + V+D TI+P DE Sbjct: 229 DYTIPLGQAETVR-SGKD-LTLVAWGTQVHVALEAAQLAKEKLNADVEVIDLQTIQPWDE 286 Query: 413 AAVLENARAAEGRILVVEDHYQAGGVGEAVLSAV 514 V+E+ + GR++V + + G G + S V Sbjct: 287 DHVVESVQKT-GRLIVTHEAPISSGFGAEIASTV 319 >U97007-8|AAB52293.1| 323|Caenorhabditis elegans Hypothetical protein ZC196.2 protein. Length = 323 Score = 27.5 bits (58), Expect = 6.3 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%) Frame = +2 Query: 185 ICY-IRTSRPNTAILYPNDEVFKVGQAKVL 271 +C+ ++TS PN + PN ++ K G+A+ L Sbjct: 40 VCFKVKTSVPNMYVSRPNPDLLKPGEARQL 69 >U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa thiolase protein 1 protein. Length = 407 Score = 27.5 bits (58), Expect = 6.3 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = -3 Query: 307 SDQQHSVLCGLTEYFGLSNLEYFIIGIQDSRVGSRSSDVTDASS 176 S H++ G+T LSN FI+G + +GS S ++ ++ Sbjct: 3 SSSGHAIRRGITTSAALSNKHAFIVGAARTPIGSFRSSLSSVTA 46 >U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell lineage protein 13 protein. Length = 2248 Score = 27.5 bits (58), Expect = 6.3 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%) Frame = -3 Query: 250 LEYFIIGIQDSRVGSRSSDVTDASSVGCQFYCTLCRDCIRRVEDSSSRHCTE----HGKV 83 L+ F + +V + D S G F+C LC + VE+ + HC + H V Sbjct: 2106 LKQFPADVNQDQVIAHILDTHGMSMHGNTFHCNLCTTGTKTVEE-FAEHCRKAHVFHILV 2164 Query: 82 LQSHLTR 62 SH TR Sbjct: 2165 KSSHSTR 2171 >AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger protein LIN-13 protein. Length = 2248 Score = 27.5 bits (58), Expect = 6.3 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%) Frame = -3 Query: 250 LEYFIIGIQDSRVGSRSSDVTDASSVGCQFYCTLCRDCIRRVEDSSSRHCTE----HGKV 83 L+ F + +V + D S G F+C LC + VE+ + HC + H V Sbjct: 2106 LKQFPADVNQDQVIAHILDTHGMSMHGNTFHCNLCTTGTKTVEE-FAEHCRKAHVFHILV 2164 Query: 82 LQSHLTR 62 SH TR Sbjct: 2165 KSSHSTR 2171 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,270,496 Number of Sequences: 27780 Number of extensions: 226109 Number of successful extensions: 694 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 651 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 693 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1049512662 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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