Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0982
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...   216   9e-57
Z79695-1|CAB01970.1|  366|Caenorhabditis elegans Hypothetical pr...    35   0.042
U97007-8|AAB52293.1|  323|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U41105-4|AAA82397.2|  407|Caenorhabditis elegans 3-ketoacyl-coa ...    27   6.3  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    27   6.3  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    27   6.3  

>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score =  216 bits (527), Expect = 9e-57
 Identities = 98/172 (56%), Positives = 129/172 (75%)
 Frame = +2

Query: 2   SQSNINLAGSHCGVSIGEDGPSQMGLEDLAMFRTVPTATVFYPSDAVSTERAVELAANTR 181
           S +N+   GSH GVSIGEDGPSQM LEDLA+FRT+P ATVFYP+DAVS ERA ELAANT+
Sbjct: 404 SFANLKCVGSHVGVSIGEDGPSQMALEDLAIFRTIPGATVFYPTDAVSAERATELAANTK 463

Query: 182 GICYIRTSRPNTAILYPNDEVFKVGQAKVLRQSAKDRVLLIGAGITLHXXXXXXXXXXXX 361
           G+ +IRT RP   +LY N+E F +GQAKV++QSA+D+++L+G+G+TL+            
Sbjct: 464 GVVFIRTGRPALPVLYDNEEPFHIGQAKVVKQSAQDKIVLVGSGVTLYESLKAAEELEKE 523

Query: 362 GVEARVLDPFTIKPLDEAAVLENARAAEGRILVVEDHYQAGGVGEAVLSAVS 517
           G+ A V+DPFTIKPLD   + E+A    GR++  EDHY AGG+GEAV +A++
Sbjct: 524 GIHATVIDPFTIKPLDGKTIAEHALKVGGRVVTTEDHYAAGGIGEAVSAALA 575


>Z79695-1|CAB01970.1|  366|Caenorhabditis elegans Hypothetical
           protein F27D4.5 protein.
          Length = 366

 Score = 34.7 bits (76), Expect = 0.042
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = +2

Query: 236 DEVFKVGQAKVLRQSAKDRVLLIGAGITLHXXXXXXXXXXXX-GVEARVLDPFTIKPLDE 412
           D    +GQA+ +R S KD + L+  G  +H               +  V+D  TI+P DE
Sbjct: 229 DYTIPLGQAETVR-SGKD-LTLVAWGTQVHVALEAAQLAKEKLNADVEVIDLQTIQPWDE 286

Query: 413 AAVLENARAAEGRILVVEDHYQAGGVGEAVLSAV 514
             V+E+ +   GR++V  +   + G G  + S V
Sbjct: 287 DHVVESVQKT-GRLIVTHEAPISSGFGAEIASTV 319


>U97007-8|AAB52293.1|  323|Caenorhabditis elegans Hypothetical
           protein ZC196.2 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 185 ICY-IRTSRPNTAILYPNDEVFKVGQAKVL 271
           +C+ ++TS PN  +  PN ++ K G+A+ L
Sbjct: 40  VCFKVKTSVPNMYVSRPNPDLLKPGEARQL 69


>U41105-4|AAA82397.2|  407|Caenorhabditis elegans 3-ketoacyl-coa
           thiolase protein 1 protein.
          Length = 407

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 307 SDQQHSVLCGLTEYFGLSNLEYFIIGIQDSRVGSRSSDVTDASS 176
           S   H++  G+T    LSN   FI+G   + +GS  S ++  ++
Sbjct: 3   SSSGHAIRRGITTSAALSNKHAFIVGAARTPIGSFRSSLSSVTA 46


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = -3

Query: 250  LEYFIIGIQDSRVGSRSSDVTDASSVGCQFYCTLCRDCIRRVEDSSSRHCTE----HGKV 83
            L+ F   +   +V +   D    S  G  F+C LC    + VE+  + HC +    H  V
Sbjct: 2106 LKQFPADVNQDQVIAHILDTHGMSMHGNTFHCNLCTTGTKTVEE-FAEHCRKAHVFHILV 2164

Query: 82   LQSHLTR 62
              SH TR
Sbjct: 2165 KSSHSTR 2171


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = -3

Query: 250  LEYFIIGIQDSRVGSRSSDVTDASSVGCQFYCTLCRDCIRRVEDSSSRHCTE----HGKV 83
            L+ F   +   +V +   D    S  G  F+C LC    + VE+  + HC +    H  V
Sbjct: 2106 LKQFPADVNQDQVIAHILDTHGMSMHGNTFHCNLCTTGTKTVEE-FAEHCRKAHVFHILV 2164

Query: 82   LQSHLTR 62
              SH TR
Sbjct: 2165 KSSHSTR 2171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,270,496
Number of Sequences: 27780
Number of extensions: 226109
Number of successful extensions: 694
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)