Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0982
(531 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15560.1 68417.m02377 1-deoxy-D-xylulose 5-phosphate synthase... 54 6e-08
At3g21500.2 68416.m02713 1-deoxy-D-xylulose 5-phosphate synthase... 52 2e-07
At3g21500.1 68416.m02712 1-deoxy-D-xylulose 5-phosphate synthase... 52 2e-07
At5g11380.1 68418.m01328 1-deoxy-D-xylulose 5-phosphate synthase... 48 3e-06
At3g60750.1 68416.m06796 transketolase, putative strong similari... 46 2e-05
At2g45290.1 68415.m05637 transketolase, putative strong similari... 45 3e-05
At2g34590.1 68415.m04250 transketolase family protein similar to... 33 0.16
At1g30120.1 68414.m03681 pyruvate dehydrogenase E1 component bet... 33 0.16
At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p... 27 6.0
At1g72220.1 68414.m08350 zinc finger (C3HC4-type RING finger) fa... 27 7.9
>At4g15560.1 68417.m02377 1-deoxy-D-xylulose 5-phosphate synthase,
putative / 1-deoxyxylulose-5-phosphate synthase,
putative / DXP-synthase, putative (DEF) (CLA1) identical
to SP|Q38854 Probable 1-deoxy-D-xylulose 5-phosphate
synthase, chloroplast precursor (EC 4.1.3.37)
(1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
(DXPS). [Mouse-ear cress] {Arabidopsis thaliana}, DEF
(deficient in photosynthesis) protein [Arabidopsis
thaliana] GI:1399261
Length = 717
Score = 54.0 bits (124), Expect = 6e-08
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 5/163 (3%)
Frame = +2
Query: 47 IGEDGPSQMGLEDLAMFRTVPTATVFYPSDAVSTER--AVELAANTRGIC--YIRTSRPN 214
+G DGP+ G D+ +P V PSD A +A + R C Y R +
Sbjct: 504 VGADGPTHCGAFDVTFMACLPNMIVMAPSDEADLFNMVATAVAIDDRPSCFRYPRGNGIG 563
Query: 215 TAILYPNDEV-FKVGQAKVLRQSAKDRVLLIGAGITLHXXXXXXXXXXXXGVEARVLDPF 391
A+ N V ++G+ ++L++ +RV L+G G + G+ V D
Sbjct: 564 VALPPGNKGVPIEIGKGRILKEG--ERVALLGYGSAVQSCLGAAVMLEERGLNVTVADAR 621
Query: 392 TIKPLDEAAVLENARAAEGRILVVEDHYQAGGVGEAVLSAVSL 520
KPLD A + A++ E +L+ + GG G V+ ++L
Sbjct: 622 FCKPLDRALIRSLAKSHE--VLITVEEGSIGGFGSHVVQFLAL 662
>At3g21500.2 68416.m02713 1-deoxy-D-xylulose 5-phosphate synthase,
putative / 1-deoxyxylulose-5-phosphate synthase,
putative / DXP-synthase, putative strong similarity to
1-D-deoxyxylulose 5-phosphate synthase [Lycopersicon
esculentum] GI:5059160, DEF (deficient in
photosynthesis) protein [Arabidopsis thaliana]
GI:1399261; ; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF02780:
Transketolase, C-terminal domain
Length = 629
Score = 52.4 bits (120), Expect = 2e-07
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 6/164 (3%)
Frame = +2
Query: 47 IGEDGPSQMGLEDLAMFRTVPTATVFYPSDAVSTERAVELAA--NTRGICYIRTSRPN-- 214
+G DGP+ G D+ +P V PSD V AA + R C+ R R N
Sbjct: 450 MGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAIDDRPSCF-RYHRGNGI 508
Query: 215 TAILYPNDE--VFKVGQAKVLRQSAKDRVLLIGAGITLHXXXXXXXXXXXXGVEARVLDP 388
L P ++ ++G+ ++LR +RV L+G G + G++ V D
Sbjct: 509 GVSLPPGNKGVPLQIGRGRILRDG--ERVALLGYGSAVQRCLEAASMLSERGLKITVADA 566
Query: 389 FTIKPLDEAAVLENARAAEGRILVVEDHYQAGGVGEAVLSAVSL 520
KPLD A + A++ E +L+ + GG G V+ ++L
Sbjct: 567 RFCKPLDVALIRSLAKSHE--VLITVEEGSIGGFGSHVVQFLAL 608
>At3g21500.1 68416.m02712 1-deoxy-D-xylulose 5-phosphate synthase,
putative / 1-deoxyxylulose-5-phosphate synthase,
putative / DXP-synthase, putative strong similarity to
1-D-deoxyxylulose 5-phosphate synthase [Lycopersicon
esculentum] GI:5059160, DEF (deficient in
photosynthesis) protein [Arabidopsis thaliana]
GI:1399261; ; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF02780:
Transketolase, C-terminal domain
Length = 628
Score = 52.4 bits (120), Expect = 2e-07
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 6/164 (3%)
Frame = +2
Query: 47 IGEDGPSQMGLEDLAMFRTVPTATVFYPSDAVSTERAVELAA--NTRGICYIRTSRPN-- 214
+G DGP+ G D+ +P V PSD V AA + R C+ R R N
Sbjct: 449 MGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAIDDRPSCF-RYHRGNGI 507
Query: 215 TAILYPNDE--VFKVGQAKVLRQSAKDRVLLIGAGITLHXXXXXXXXXXXXGVEARVLDP 388
L P ++ ++G+ ++LR +RV L+G G + G++ V D
Sbjct: 508 GVSLPPGNKGVPLQIGRGRILRDG--ERVALLGYGSAVQRCLEAASMLSERGLKITVADA 565
Query: 389 FTIKPLDEAAVLENARAAEGRILVVEDHYQAGGVGEAVLSAVSL 520
KPLD A + A++ E +L+ + GG G V+ ++L
Sbjct: 566 RFCKPLDVALIRSLAKSHE--VLITVEEGSIGGFGSHVVQFLAL 607
>At5g11380.1 68418.m01328 1-deoxy-D-xylulose 5-phosphate synthase,
putative / 1-deoxyxylulose-5-phosphate synthase,
putative / DXP-synthase, putative similar to
1-deoxy-D-xylulose 5-phosphate synthase 1 [Medicago
truncatula] GI:21322713; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF02780:
Transketolase, C-terminal domain
Length = 700
Score = 48.4 bits (110), Expect = 3e-06
Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 4/162 (2%)
Frame = +2
Query: 47 IGEDGPSQMGLEDLAMFRTVPTATVFYPSDAVSTERAVELAA--NTRGIC--YIRTSRPN 214
+G DGP Q G D+A ++P P+D V AA R +C + R S N
Sbjct: 485 VGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATAAYVTDRPVCFRFPRGSIVN 544
Query: 215 TAILYPNDEVFKVGQAKVLRQSAKDRVLLIGAGITLHXXXXXXXXXXXXGVEARVLDPFT 394
L P ++G+ +VL + V L+G G + G+ V D
Sbjct: 545 MNYLVPTGLPIEIGRGRVLVEG--QDVALLGYGAMVQNCLHAHSLLSKLGLNVTVADARF 602
Query: 395 IKPLDEAAVLENARAAEGRILVVEDHYQAGGVGEAVLSAVSL 520
KPLD V + + + L+ + GG G V ++L
Sbjct: 603 CKPLDIKLVRDLCQ--NHKFLITVEEGCVGGFGSHVAQFIAL 642
>At3g60750.1 68416.m06796 transketolase, putative strong similarity
to transketolase 1 [Capsicum annuum] GI:3559814;
contains Pfam profiles PF02779: Transketolase, pyridine
binding domain, PF02780: Transketolase, C-terminal
domain, PF00456: Transketolase, thiamine diphosphate
binding domain
Length = 741
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +2
Query: 2 SQSNINLAGSHCGVSIGEDGPSQMGLEDLAMFRTVPTATVFYPSDAVSTERAVELAANTR 181
S++ + +H + +GEDGP+ +E +A FR +P +F P+D T A ++A R
Sbjct: 529 SEAGVIYVMTHDSIGLGEDGPTHQPIEHIASFRAMPNTLMFRPADGNETAGAYKIAVTKR 588
>At2g45290.1 68415.m05637 transketolase, putative strong similarity
to transketolase 1 [Capsicum annuum] GI:3559814;
contains Pfam profiles PF02779: Transketolase, pyridine
binding domain, PF02780: Transketolase, C-terminal
domain, PF00456: Transketolase, thiamine diphosphate
binding domain
Length = 741
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +2
Query: 2 SQSNINLAGSHCGVSIGEDGPSQMGLEDLAMFRTVPTATVFYPSDAVSTERAVELAANTR 181
S++ + +H + +GEDGP+ +E L+ FR +P +F P+D T A ++A R
Sbjct: 529 SEAGVIYVMTHDSIGLGEDGPTHQPIEHLSSFRAMPNIMMFRPADGNETAGAYKIAVTKR 588
>At2g34590.1 68415.m04250 transketolase family protein similar to
SP|O66113 Pyruvate dehydrogenase E1 component, beta
subunit (EC 1.2.4.1). {Zymomonas mobilis}; contains Pfam
profiles PF02779: Transketolase, pyridine binding
domain, PF02780: Transketolase, C-terminal domain
Length = 406
Score = 32.7 bits (71), Expect = 0.16
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +2
Query: 362 GVEARVLDPFTIKPLDEAAVLENARAAEGRILVVEDHYQAGGVGEAVLSAVS 517
G + V+D ++KP D + + + R+L+VE+ + GG+G ++ +A++
Sbjct: 309 GYDPEVIDIRSLKPFDLYTIGNSVKKTH-RVLIVEECMRTGGIGASLTAAIN 359
>At1g30120.1 68414.m03681 pyruvate dehydrogenase E1 component beta
subunit, chloroplast identical to pyruvate dehydrogenase
E1 beta subunit [Arabidopsis thaliana] GI:2454184;
identical to cDNA pyruvate dehydrogenase E1 beta subunit
mRNA, nuclear gene encoding plastid protein GI:2454183
Length = 406
Score = 32.7 bits (71), Expect = 0.16
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +2
Query: 362 GVEARVLDPFTIKPLDEAAVLENARAAEGRILVVEDHYQAGGVGEAVLSAVS 517
G + V+D ++KP D + + + R+L+VE+ + GG+G ++ +A++
Sbjct: 309 GYDPEVIDIRSLKPFDLHTIGNSVKKTH-RVLIVEECMRTGGIGASLTAAIN 359
>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
protease, putative contains similarity to cysteine
proteinase RD21A (thiol protease) GI:435619, SP:P43297
from [Arabidopsis thaliana]
Length = 452
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 289 PSVVDRSRNHAARSTCCC 342
P V D+S A+STCCC
Sbjct: 360 PVVCDKSNTCPAKSTCCC 377
>At1g72220.1 68414.m08350 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger); similar to GI:4928397
from [Arabidopsis thaliana] (Plant Mol. Biol. 40 (4),
579-590 (1999))
Length = 413
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 171 PTLEASVTSELLDPTRLSCIPMMKYSRLDRPK-YSVSPQRTECC*SEPESRC 323
PTL AS T++ LD + C P+ Y+ P Y++SPQ S S C
Sbjct: 11 PTL-ASETNKTLDCSNGVCDPICPYNCYPEPDYYTISPQLPPWSSSPQPSPC 61
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,648,926
Number of Sequences: 28952
Number of extensions: 211720
Number of successful extensions: 616
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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