Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0981
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    31   0.16 
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    31   0.21 
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar...    31   0.21 
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    30   0.27 
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    27   2.6  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    27   2.6  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   3.4  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    26   4.5  
SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schiz...    26   4.5  
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    26   4.5  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    26   4.5  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    26   4.5  
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    26   5.9  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    26   5.9  
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po...    26   5.9  
SPAC2G11.15c |tgs1|SPAC521.01c|RNA methyltransferase Tgs1 |Schiz...    25   7.8  

>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 168 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEFINDHIREVK 302
           C+VC   F ++     H + K HKKNL     + + I  H +E +
Sbjct: 272 CMVCNKNFRSQNQLENHENSKKHKKNLRK---MNQEIKKHAKEAQ 313


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 485 SNDSMPSCFGDSHIFESNYIISHS 414
           S +S   CF DS +F+ +Y ISHS
Sbjct: 345 SEESSEMCFADSPLFDPDYCISHS 368


>SPBC1604.16c |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
 Frame = +3

Query: 225 KKGHKKNLEANGFVEEFINDHIREVKN---GFFCEYCNKYISGPTKIR-----LHILENT 380
           +KG  +    + F  +  N H    K    GF CE C  YI    KI       H+L + 
Sbjct: 40  EKGSAQAFYHSLFENDRDNSHTMNSKRDEAGFACEVCQIYIPNSKKINHFKSMTHLLSSQ 99

Query: 381 HINNK 395
           HI+NK
Sbjct: 100 HISNK 104


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = +3

Query: 168 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFV--EEFINDHIRE-VKNGFFCEYCNKYI 338
           CL C   F +     +H+ K  H   +    ++  E  + D++ E +  GF C  CN+  
Sbjct: 210 CLFCAASFSSFDTCKKHM-KASHSLYIPEREYLVDEPSLFDYLAEKISIGFTCLTCNREF 268

Query: 339 SGPTKIRLHILENTH 383
                +R H+ +  H
Sbjct: 269 KSLEAVRAHMQQKGH 283



 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = +3

Query: 480 VGHTCLICNIKFGDME---IHISTKEHLFKLVQTE 575
           +G TCL CN +F  +E    H+  K H      TE
Sbjct: 257 IGFTCLTCNREFKSLEAVRAHMQQKGHTSIAYDTE 291


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 29/117 (24%), Positives = 50/117 (42%)
 Frame = -2

Query: 544 LVEM*ISISPNLILQIKQVCPTIPCQAALAIVTFLKATILFPTLSRFRMPLLLICVFSKI 365
           LVE  I+ S N+++ + ++C   PC+    ++  L       T++ F    L +   +K 
Sbjct: 419 LVESLIAHSTNIMVDLVRICSHNPCRFRRNLINLLPEI----TVAHFEAEALDLKFVAK- 473

Query: 364 WSLILVGPDMYLLQYSQKNPFLTSLMWSFINSSTKPLASKFFLWPFFEICLLASFSV 194
            SL   GP    + + + N     L+ SF     +P     + WP F   L   FS+
Sbjct: 474 -SLPSNGPFSSFIYHVKLNAIEHILLSSFEQKLHQP-----YQWPHFFAVLDHVFSI 524


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 495 LICNIKFGDMEIHISTKEHLFKLVQTEVKFATHKGLYRTMKE 620
           ++C  KFG +    S ++ + KL++T  K+     L R M+E
Sbjct: 232 VVCRAKFGLVASSQSAQQIVEKLLKTATKYEALNSLKRIMEE 273


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -2

Query: 388 LICVFSK-IWSLILVGPDMYL-LQYSQKNPFLTSLMWSFINSSTKPLASKFFLWPFFEIC 215
           +IC+    IW   L+    +  +   +++ F+ +L++SF++   +PL        F +I 
Sbjct: 693 VICILGVLIWQFFLLSRSKFAKINVIERSYFVFALLYSFLSFLQRPLGHLSLFSCFLQIL 752

Query: 214 LL 209
           LL
Sbjct: 753 LL 754


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +3

Query: 291 REVKNGFFCEYCNKYISGPTKIRLHILENTHINNKGIRNLE 413
           ++    F+CE C K+    T    H     H  NK ++ ++
Sbjct: 237 KDSTEAFYCEVCQKFFGKITVFEAHKKSKAH--NKAVKRMQ 275


>SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
 Frame = +3

Query: 45  ILCIYLLSRVLSTAAGSHSRTSKMIPKLNRNAILVGKVHS------CCLVCGNYFPTEKD 206
           ++ + LLS   +TA+    +  K  PK+ +N  L G + +      CC V    F T  D
Sbjct: 109 VMSVLLLSWCDTTASTVGRKWGKYTPKIAKNKSLAGSLGAFVCGVFCCYVYWGLFRTGPD 168

Query: 207 ANRHISKKGHKKNLEANGFVEEF 275
           +    S+         NGF+  F
Sbjct: 169 SLAAQSRIPFPWLCLINGFIGAF 191


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 54  IYLLSRVLSTAAGSHSRTSKMIPKLNRNAILVGKVHSCCLVCGNY 188
           I +LS V+S    +H        +LN +A +V  V S  L+C  Y
Sbjct: 53  INILSPVISRHLSTHYAKLSKKTRLNWDAHVVSSVQSIVLICLGY 97


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 168 CLVCGNYFPTEKDANRHISKKGH 236
           C +CG     EKDA  H    GH
Sbjct: 301 CTICGTGLVGEKDATAHALATGH 323


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 175 SVAITSPLRRMLTDIFRKKATRRIWKLTASWKNL 276
           S+    PLR  L DI + +   R W + ASW N+
Sbjct: 493 SLNAREPLRVTLEDIEQIETKGRWWLVGASWNNV 526


>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 477 IVGHTCLICNIKFGDMEIHISTKEHLFKLVQTEVKFATHKG 599
           ++GH  LIC     D +      + +++L+Q  +K+A   G
Sbjct: 166 VIGHFDLICLFAPEDAKEVFKNSKSVWELIQRNIKYAVSYG 206


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 258 GFVEEFINDHIREVKNGFFCEYCNKYISGPTK 353
           GFV+E+ ++   +  N     YCN   SG T+
Sbjct: 98  GFVQEYRSEQSLKALNNLVPHYCNVIRSGKTE 129


>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 249 EANGFVEEFINDHIREV-KNGFFCEYCNKYISGPTKIRLHIL 371
           +A G  + F++ ++  V  NGF  ++   Y  GPT IRL  L
Sbjct: 18  QALGINQPFVSAYLSFVLANGFLLKWLIHYSIGPTIIRLFSL 59


>SPAC2G11.15c |tgs1|SPAC521.01c|RNA methyltransferase Tgs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = -1

Query: 386 DMRVFQNMEPYFGGPRYVLVTVFTEESVFDLPNVVIYKFFHEAVSFQILLVAFF-RNMSV 210
           D R    M P +GGP Y   TV+   S+ DL        F EA      + AF  RN  V
Sbjct: 142 DYRSLVFMSPPWGGPSYSGKTVY---SLNDLNPYAFDVLFKEATRISPYVAAFLPRNTDV 198

Query: 209 SIL 201
             L
Sbjct: 199 KEL 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,477
Number of Sequences: 5004
Number of extensions: 69679
Number of successful extensions: 255
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)