Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0981
(689 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0) 37 0.013
SB_53497| Best HMM Match : zf-C2H2 (HMM E-Value=0) 36 0.031
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 36 0.041
SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.041
SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.041
SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.071
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.071
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0) 34 0.094
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0) 33 0.29
SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42) 33 0.29
SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_5864| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68) 31 0.88
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.88
SB_20597| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 0.88
SB_58451| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 1.2
SB_34420| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_18040| Best HMM Match : C1_3 (HMM E-Value=0.055) 31 1.2
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 31 1.2
SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_26192| Best HMM Match : zf-C2H2 (HMM E-Value=0) 30 2.0
SB_53672| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_40135| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_32644| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 2.7
SB_27096| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 3.6
SB_34698| Best HMM Match : Rhomboid (HMM E-Value=5.9e-21) 29 4.7
SB_53362| Best HMM Match : RHD (HMM E-Value=0.94) 29 4.7
SB_45123| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 4.7
SB_11426| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_38409| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_34889| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 8.2
SB_20824| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 8.2
>SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 907
Score = 37.1 bits (82), Expect = 0.013
Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 14/139 (10%)
Frame = +3
Query: 168 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEF-----INDHIR--EVKNGFFCEYC 326
C VC FPTE RH + + +EF + HIR + + C +C
Sbjct: 93 CFVCSKAFPTEIALKRHNNVHDRINKCTCSYCGKEFNTSRNMKRHIRFHTQEKPYKCSHC 152
Query: 327 NKYISGPTKIRLHILENTHINNK----GIRNLERVGNNIVAFKNVTIAKAAWHGIVGHTC 494
+K S + ++ H TH K I + +N + F + A +G HTC
Sbjct: 153 SKAFSDASILKRH--TRTHTKEKPYVCEICGKAFIQSNGLRFHQIVHTGAQPNGCKIHTC 210
Query: 495 LICNIKFG---DMEIHIST 542
C+ FG D+ H+ T
Sbjct: 211 DFCSKAFGRHSDLVRHVRT 229
>SB_53497| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 462
Score = 35.9 bits (79), Expect = 0.031
Identities = 45/203 (22%), Positives = 84/203 (41%), Gaps = 16/203 (7%)
Frame = +3
Query: 108 SKMIPKLNRNAILVGKVHSCCLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEF---- 275
S ++ K++ + L K HSC VCG F T + H+ +K + + F
Sbjct: 42 SSIVHKVSHDLQLHEKEHSCN-VCGKCFSTFGNLKIHLLTHSGEKPHQCPKCDKSFTLAW 100
Query: 276 -INDHIR--EVKNGFFCEYCNKYISGPTKIRLHILENT----HINN---KGIRNLERVGN 425
+ +H+R + F CE C K + ++ H+L ++ H N K ++L + +
Sbjct: 101 NLKNHLRLHTGEKPFHCEECGKCFARKGHLKAHLLAHSGLKPHTCNECGKSFKSLSHLKD 160
Query: 426 NIVAFKNVTIAKAAWHGIVGHTCLICNIKFGDMEIH--ISTKEHLFKLVQTEVKFATHKG 599
++ N +A C IC ++ ++ H I + L + + E++F H+
Sbjct: 161 HLWVHSN-----SANKSFECKDCGICFLQSESLKEHVKIHLAQKLHQCGKCEMRFTQHEM 215
Query: 600 LYRTMKENSVHCLTCNEVIKTAT 668
L +K + C E K T
Sbjct: 216 LKTHLKVHDEKPYKCKECDKCYT 238
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 35.5 bits (78), Expect = 0.041
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 168 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFVE 269
C +CG F T K N H+ K K N+ AN +E
Sbjct: 374 CPICGLVFKTTKSRNSHVKKCAQKNNIPANQVIE 407
>SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 35.5 bits (78), Expect = 0.041
Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 18/199 (9%)
Frame = +3
Query: 66 SRVLST--AAGSHSRTSKMIPKLNRNAILVGKVHSC---CLVCGNYFPTEKDANRHI--- 221
SR ST A+G+ R + + N I+ K + C CG ++ D NRH
Sbjct: 336 SRKTSTKVASGAKKRKTDRGKEYNGTGIIKKKRYRQDVECPTCGKSLGSKTDLNRHAVVH 395
Query: 222 -SKKGHKKNLEANGFVEE-FINDHIREVKNG--FFCEYCNKYISGPTKIRLHILENTHIN 389
+K K + + F ++ + H + +NG FFC++C K + +H+ H
Sbjct: 396 SGEKPFKCTICSKAFSQKGDLTRHSQNHENGKKFFCKFCAKGFNRKDVYNVHL--RIHTK 453
Query: 390 NKGIR-NLERVGNNIVAFKNVTIAKAAWH-GIVGHTCLICNIKFGDMEI---HIST-KEH 551
K + ER G A K++ + H G+ + C +C+ F + H T +E
Sbjct: 454 EKPFKCQHERCGKKF-ARKDLFEYHSRTHSGLKPYRCRLCDKYFAQRSLVRSHERTHQEK 512
Query: 552 LFKLVQTEVKFATHKGLYR 608
FK ++ F L R
Sbjct: 513 PFKCSDCKMSFRQRISLQR 531
>SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 35.5 bits (78), Expect = 0.041
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 168 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFVE 269
C +CG F T K N H+ K K N+ AN +E
Sbjct: 374 CPICGLVFKTTKSRNSHVKKCAQKNNIPANQVIE 407
>SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 34.7 bits (76), Expect = 0.071
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 240 KNLEANGFVEEFINDHIREVKNGFFCEYCNK 332
KN +E+F+N I E N +FCE CNK
Sbjct: 156 KNHNLQDSLEQFVNGEILEGDNAYFCEKCNK 186
>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 34.7 bits (76), Expect = 0.071
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 240 KNLEANGFVEEFINDHIREVKNGFFCEYCNK 332
KN +E+F+N I E N +FCE CNK
Sbjct: 148 KNHNLQDSLEQFVNGEILEGDNAYFCEKCNK 178
>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1741
Score = 34.3 bits (75), Expect = 0.094
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +3
Query: 66 SRVLSTAAGSHSRTSKMIPK---LNRNAILVGKVHSCCLVCGNYFPTEKDANRHISKKGH 236
+++LS+A S S+ + PK +N +I V CC +CG F K +RH +
Sbjct: 852 NKILSSAKNSSSKLMETFPKSKTINPQSISV----YCCSICGASFGKSKALSRHHRRIHR 907
Query: 237 KKNLEANGFVE 269
KN+ +G E
Sbjct: 908 GKNIIKSGSTE 918
>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 32.7 bits (71), Expect = 0.29
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 282 DHIREVKNGFFCEYCNKYISGPTKIRLHILENTHINNK 395
+ + +K + CE+C KY+ PT +R H++ + K
Sbjct: 470 EEYQRLKKIYLCEFCLKYMKSPTILRRHMVVTVTVTRK 507
>SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 587
Score = 32.7 bits (71), Expect = 0.29
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Frame = +3
Query: 153 KVHSCCLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEF-------INDHIREVKNGF 311
K+H C VC F + H H++ + + F I++ I + +
Sbjct: 271 KIHKC-EVCSRVFNKCSNLKAHALSHSHERPYACDKCDKTFQRTSQLVIHNRIHNSETPY 329
Query: 312 FCEYCNKYISGPTKIRLHIL 371
C+ C K G T +RLH+L
Sbjct: 330 SCDKCEKSFRGRTNLRLHLL 349
>SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 32.7 bits (71), Expect = 0.29
Identities = 34/134 (25%), Positives = 50/134 (37%), Gaps = 5/134 (3%)
Frame = +3
Query: 240 KNLEANGFVEEFINDHIREVKNGFFCEYCNKYISGPTKIRLHILENTHINNKGIRNLERV 419
K G V + H E F C YC+K S + +HI +T N+
Sbjct: 412 KRFATTGQVTSHMRTHTGE--QPFKCTYCDKAFSIKGNLTVHIRRHT---NERPYVCTTC 466
Query: 420 GNNIVAFKNVTIAKAAWHGIVGHTCLICNIKF---GDMEIH--ISTKEHLFKLVQTEVKF 584
G + + + + + C IC KF G + IH I T+E + Q E F
Sbjct: 467 GKSFTVISQLVMHNRSHTDERPYKCDICGKKFRQQGGLSIHKKIHTEEKPHECTQCEKAF 526
Query: 585 ATHKGLYRTMKENS 626
T L R + +S
Sbjct: 527 ITKAKLDRHFRTHS 540
>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
Length = 1078
Score = 32.7 bits (71), Expect = 0.29
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Frame = +3
Query: 168 CLVCGNYFPTEKDANRHISKKGHKKNLEAN---------GFVEEFINDHIREVKNG-FFC 317
C CG FP E N H+ K + K E + + H + + G + C
Sbjct: 344 CKECGELFPKEDKLNAHVLKHPNYKAFECHICHSCYETLACLRRHATVHTTKQRKGRYAC 403
Query: 318 EYCNKYISGPTKIRLH 365
YC K ++ P+ ++ H
Sbjct: 404 AYCGKIMAKPSALKEH 419
>SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 765
Score = 31.9 bits (69), Expect = 0.50
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Frame = +3
Query: 177 CGNYFPTEKDANRHI----SKKGHKKNLEANGFVE-EFINDHIREVKNGF--FCEYCNKY 335
C + F E RH+ +K +K GF + +NDHI+ F C C++
Sbjct: 486 CTSTFYREDKLKRHLFTHSKEKPYKCQECGKGFARRDNMNDHIKTHTKEFSHICPLCDRG 545
Query: 336 ISGPTKIRLHILENTH 383
GP KI+ H L++ H
Sbjct: 546 FLGPAKIKKH-LKSVH 560
>SB_5864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 31.5 bits (68), Expect = 0.67
Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 7/157 (4%)
Frame = +3
Query: 168 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEFI-------NDHIREVKNGFFCEYC 326
C CG T + +H+ HKK + +EF+ + + + +N C C
Sbjct: 106 CGNCGKDMATPERLAKHMET--HKKKFGCDICEKEFVFYSSLEKHRKVHQERNPNHCHLC 163
Query: 327 NKYISGPTKIRLHILENTHINNKGIRNLERVGNNIVAFKNVTIAKAAWHGIVGHTCLICN 506
K P+K+++H+ ++T + E G ++ K G C +C
Sbjct: 164 EKEFDTPSKLKVHMRKHT---QEKPYECETCGKQFRVTSDLIRHKRIHTGCKPFLCEVCG 220
Query: 507 IKFGDMEIHISTKEHLFKLVQTEVKFATHKGLYRTMK 617
F H + HL + V + ++ T +T K
Sbjct: 221 QGF---NCHANRNRHL-RTVHSNIRPYTCNNCQKTFK 253
>SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)
Length = 794
Score = 31.1 bits (67), Expect = 0.88
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 279 NDHIREVKNGFFC-EYCNKYISGPTKIRLHILENTHINNK 395
N H+ F+C CN YI+G + I H +TH+ NK
Sbjct: 423 NVHVLYAFASFWCIAMCNMYITGYSMIDYHDTMSTHLKNK 462
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 31.1 bits (67), Expect = 0.88
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Frame = +3
Query: 291 REVKNG-FFCEYCNKYISGPTKIRLHILENTHINNKGIRNLERVGNNIVAFKNVTIAKAA 467
R++ NG CE CNK P+ ++ H+ H N K + E G + +
Sbjct: 769 RKLSNGPRICEECNKAFKYPSDLKKHL--QIHTNIKKFK-CEECGRLFRRLHQLNVHSRI 825
Query: 468 WHGIVGHTCLICNIKF---GDMEIHISTK-EHL 554
G + C C + F + +HI T+ +HL
Sbjct: 826 HTGEKPYVCNRCGVSFRHDSTLTMHIRTRHDHL 858
>SB_20597| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 268
Score = 31.1 bits (67), Expect = 0.88
Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 7/126 (5%)
Frame = +3
Query: 168 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEF-------INDHIREVKNGFFCEYC 326
C CG F +D RHI +K + + F +D I + C+ C
Sbjct: 136 CETCGRRFTESRDLARHIRSHTGEKPYQCMKCGKSFAHKCTLVTHDRIHTGVRPYSCKVC 195
Query: 327 NKYISGPTKIRLHILENTHINNKGIRNLERVGNNIVAFKNVTIAKAAWHGIVGHTCLICN 506
NK + ++ H E TH+ + + ++ KN+ + + +TC C
Sbjct: 196 NKTFVQISTLKSH--EKTHLKKPVVWSCDQCMRTF--SKNIQLVSHKRSHLPKYTCETCG 251
Query: 507 IKFGDM 524
F +
Sbjct: 252 ETFSKL 257
>SB_58451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = -2
Query: 406 FRMPLLLICVFSKIWS---LILVGPDMYLLQYSQKNPFLTSLMWSFINSSTKPLASKFF 239
F+M L+++ VF WS +++ +Y +Q+ +T+ + +F+NSS P FF
Sbjct: 412 FKMVLMIVAVFLVCWSPHFILIFYGSLYQIQFPAAVKAVTTWL-TFLNSSFNPFLYGFF 469
>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1041
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 216 HISKKGHKKNLEANGFVEEFIND-HIREVKN--GFFCEYCNKYISGPTKIRLHILENT 380
H KK +K N GF ++ + + HI F CEYC + S I H+L +T
Sbjct: 870 HNKKKMYKCNFCGKGFNDKIVLEKHIYSHTGVKPFKCEYCGRAFSDSLSIEKHLLVHT 927
>SB_34420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 544
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Frame = +3
Query: 168 CLVCGNYFPTEKDANRHISK-----KGHKKNLEANGFV-EEFINDHI--REVKNGFFCEY 323
C+ CG+ F D RH+S K HK + F + + +HI + F CE
Sbjct: 232 CIQCGHRFRRSSDLVRHVSSVHSKIKPHKCQECSKAFSRKSHLRNHILSMHTHDQFECEQ 291
Query: 324 CNKYISGPTKIRLH 365
C K+ ++ H
Sbjct: 292 CQKFFDSYNQLHNH 305
>SB_18040| Best HMM Match : C1_3 (HMM E-Value=0.055)
Length = 108
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +3
Query: 144 LVGKVHSCCLVCGNYFPTEKDANRHISKKGHK-KNLEANGFVEEFINDH--IREVKNGFF 314
+ G CC++CG + P ++D +HI+ K K A G + FI + G+
Sbjct: 34 IAGLNKDCCVICGAHVPFKQD--KHIAMLCQKHKPFVAPGHKKCFICERPAFGNTHKGYT 91
Query: 315 CEYCNKY 335
C C Y
Sbjct: 92 CMVCTSY 98
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = +3
Query: 228 KGHKKNLEANGFVEEFINDHIREVKNGFFCEYCNKYISGPTKIRLHILENT 380
K ++ N+ + + DH+ E C C+K S P+ ++ H+ +T
Sbjct: 344 KSYRNNVAVQNNHDGRMEDHLEEPDYSITCHVCHKIYSRPSTLKAHLRVHT 394
>SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 30.3 bits (65), Expect = 1.5
Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 14/187 (7%)
Frame = +3
Query: 168 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEF-------INDHIREVKNGFFCEYC 326
C C F T++ HI +++ N + F ++ H+ K F CE C
Sbjct: 131 CSTCNKAFATKQTLIVHIRVHTNERPFVCNECGKAFKTSGDLGVHKHLHSGKRPFKCEQC 190
Query: 327 NKYISGPTKIRLHILENTHINNKGIRNLERVGNNIVAFKNVTIAKAAWHGIVGHTCLICN 506
+K + + H+ +T K + G + + + + H V C C
Sbjct: 191 DKGFLKKSSLTYHLTLHT---GKRPYQCQECGKSYRLRSELNYHERS-HKCV-FPCKECG 245
Query: 507 IKFGD---MEIHISTKEHLFKLVQTEVKFATHKGL----YRTMKENSVHCLTCNEVIKTA 665
F +E+H+ K + FATHK L + V C CNE+ +
Sbjct: 246 KSFRSSYLLEVHLRRHAIKTKCKYCKEGFATHKELETHVLSVHSDALVSCKLCNELFEGE 305
Query: 666 TQIFVSL 686
++ V +
Sbjct: 306 KRLRVHI 312
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Frame = +3
Query: 159 HSC---CLVCGNYFPTEKDANRHISKKGHKKNLE--ANGFV-EEFINDHIREVKNGFF-- 314
H C C CG F + H+ + K + GF + + H+ V +
Sbjct: 235 HKCVFPCKECGKSFRSSYLLEVHLRRHAIKTKCKYCKEGFATHKELETHVLSVHSDALVS 294
Query: 315 CEYCNKYISGPTKIRLHI 368
C+ CN+ G ++R+HI
Sbjct: 295 CKLCNELFEGEKRLRVHI 312
>SB_26192| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 777
Score = 29.9 bits (64), Expect = 2.0
Identities = 42/203 (20%), Positives = 80/203 (39%), Gaps = 11/203 (5%)
Frame = +3
Query: 99 SRTSKMIPKLNRNAILVGKVHSCCLVCGNYFPTEKDANRHISKKGHKKNLEANGFV---E 269
SR K + +++ K + C CG F + + RH+ +K + + V +
Sbjct: 449 SRGEKSPENTSNDSLRTEKTYKCD-ECGKCFNRKTNLKRHLIIHSRRKPYKCDECVLYPK 507
Query: 270 EFINDH--IREVKNGFFCEYCNKYISGPTKIRLHILENTHINNKGIRNLERVGNNIVAFK 443
+H I + + C+ C K S ++ H++ H K + + G +
Sbjct: 508 NKPEEHLIIHSKRKSYKCDECGKCFSESGNLKKHLI--IHSRRK-LYKCDEFGKSFTQHY 564
Query: 444 NVTIAKAAWHGIVGHTCLICN---IKFGDMEIHIS--TKEHLFKLVQTEVKFATHKGLYR 608
++ G + C C IKFG ++ H+S T++ +K + F+ L R
Sbjct: 565 HLKTHVRIHSGQKPYQCDECGKCYIKFGALKRHLSIHTEQKPYKCDKCGKGFSESGALKR 624
Query: 609 TMKENSVH-CLTCNEVIKTATQI 674
+ +S C+E K TQ+
Sbjct: 625 HVIIHSRRKPYKCDECGKCFTQL 647
>SB_53672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 258 GFVEEFIND-HIREVKNGFFCEYCNKYISGPTKIRLHILENT 380
G E+ IND + ++V G+ CE C K + +++H+ +T
Sbjct: 524 GCSEDMINDLNSKKVNKGYLCELCGKLYTRKYGLKIHMRIHT 565
>SB_40135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +3
Query: 384 INNKGIRNLERVGNNIVAFKNVTIAKAAWHGIVGHTCLICNIKFGDMEIHISTKE 548
I K ++N GN I F+N WHG CL+ KFG + + TK+
Sbjct: 162 IQGKVMQNASLNGNYIFLFQNPKDGSPIWHG----KCLLDTGKFGYLFRDLKTKQ 212
>SB_32644| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 365
Score = 29.5 bits (63), Expect = 2.7
Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 10/137 (7%)
Frame = +3
Query: 168 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEF-----INDH--IREVKNGFFCEYC 326
CL CG F +H S ++K+ E + F ++ H I F C+YC
Sbjct: 227 CLTCGKTFGHSVSLEQHKSIHTNEKSFECKECGKAFKRSSTLSTHMLIHSDTRPFPCQYC 286
Query: 327 NKYISGPTKIRLHILENTHINNKGIRNLERVGNNIVAFKNVTIAKAAWHGIVGHTCLICN 506
K + ++ H H K + LE G N+ G +C +C
Sbjct: 287 PKRFHQKSDMKKHTY--IHTGEKPHKCLE-CGKAFSQSSNLITHSRKHSGFKPFSCQVCR 343
Query: 507 IKF---GDMEIHISTKE 548
F D+ H+ T E
Sbjct: 344 RSFYRKVDLRRHMYTHE 360
>SB_27096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 421 PTLSRFRMPLLLICVFSKIWSLILVGPDMYLLQYSQKNPFLTS 293
PT F P+ + C FSK W+ +M + + +P LTS
Sbjct: 660 PTRQDFTSPIAVQCAFSKQWNFRQEAMEMLEQEMTSSSPDLTS 702
>SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 935
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Frame = +3
Query: 168 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEE-------FINDHIREVK-NGFFCEY 323
C C F +++ RH+ E + E ++ DHIR +GF C
Sbjct: 90 CKECNVQFADKREKRRHVRVSHPPPQGELKCHICEKVYSNKHYLRDHIRTHNPDGFKCPE 149
Query: 324 CNKYISGPTKIRLHI 368
C K S + +R H+
Sbjct: 150 CGKNFSSGSNLRKHV 164
>SB_34698| Best HMM Match : Rhomboid (HMM E-Value=5.9e-21)
Length = 261
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -2
Query: 400 MPLLLICVFSKIWSLILVGPDMYLLQYSQKNPFLTSLMWSF 278
M L L+ VFS + S++LVG D++L + + +L S F
Sbjct: 105 MFLYLLAVFSVLTSVVLVGLDIFLANVTGDSSYLYSCAAGF 145
>SB_53362| Best HMM Match : RHD (HMM E-Value=0.94)
Length = 367
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -1
Query: 287 VVIYKFFHEAVSFQILLVAF--FRNMSVSILLSGEVIATDKTAGVD 156
++ YK F++ +S +I F F +S S LLS E IA K G+D
Sbjct: 213 LIYYKMFNDLISGKIKSKQFLKFLKLSGSKLLSEEPIAVAKGYGID 258
>SB_45123| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 336
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Frame = +3
Query: 168 CLVCGNYFPTEKDANRH----ISKKGHKKNLEANGFVEEF-INDHIR--EVKNGFFCEYC 326
C +CG F RH KK HK + F + H+R + F C+ C
Sbjct: 198 CNICGKGFRLSSTLCRHKIIHTQKKPHKCEVCNKSFNRSSTLKTHVRTHSEEKAFVCDIC 257
Query: 327 NKYISGPTKIRLHILENT 380
K +R HI+ +T
Sbjct: 258 GKGFHQKGNLRNHIMIHT 275
>SB_11426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Frame = +3
Query: 168 CLVCGNYFPTEKDANRH---ISKKGHKKNLEANGFVEEFINDHIRE---VKNGFFCEYCN 329
C C F TE+ RH + K K + ++ +D E + F C YCN
Sbjct: 254 CDKCDKDFKTERSVRRHKRTVHNKSCPKPAVSTQGIQTTHDDEKPERHTTEKLFDCCYCN 313
Query: 330 KYISGPTKIRLHI 368
K + +R HI
Sbjct: 314 KNFTAARSVRRHI 326
>SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 27.9 bits (59), Expect = 8.2
Identities = 43/181 (23%), Positives = 70/181 (38%), Gaps = 16/181 (8%)
Frame = +3
Query: 123 KLNRNAILVGKVHSCCLVCGNYFPTEKDANRHISKKGHKK----NLEANGFV---EEFIN 281
K + N +G+ C +C F RH+ K H+K + E G ++
Sbjct: 534 KAHVNTTHLGEKRFKCEICEKCFGFLTHLKRHV-KTVHEKEKPHHCEKCGKCFSSTSYLK 592
Query: 282 DHIREVKNG---FFCEYCNKYISGPTKIRLHILENTHINNKGIRNLERVGNNIVAFKNVT 452
HI+ V N F C+ CN S ++ HI E H + + + +++
Sbjct: 593 LHIKSVHNEKKLFKCDQCNLLFSWQCSLKSHIRE-VHKDVEKRSKCDECQKCFHRHRDLL 651
Query: 453 IAKAAWH-GIVGHTCLICNIKFG---DMEIHIST--KEHLFKLVQTEVKFATHKGLYRTM 614
K H + C +C FG + HI T ++ FK + E KF+ L R +
Sbjct: 652 THKRTVHKKEKPYKCDVCKKIFGLSSSLSRHIRTVHQDKAFKCERCEKKFSQPYHLTRHV 711
Query: 615 K 617
K
Sbjct: 712 K 712
>SB_38409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -1
Query: 335 VLVTVFTEESVFDLPNVVIYKFFHE 261
+LV +FT S+F + N++I K +H+
Sbjct: 55 LLVLIFTSFSIFGIRNLLITKLYHD 79
>SB_34889| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 615
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 168 CLVCGNYFPTEKDANRHISKKGHKKN 245
C +CG+ F D RH++ ++KN
Sbjct: 469 CSICGHAFVKSADLKRHVAAHNNEKN 494
>SB_20824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 479
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Frame = +3
Query: 168 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEF-----INDHIREV--KNGFFCEYC 326
C C F T ++ H+ +K + F +N+HIR K F+CE C
Sbjct: 395 CGQCELSFGTSRELRIHVDTHASEKPFKCGFCSRSFAGATTLNNHIRTHMGKRPFYCERC 454
Query: 327 NKYISGPTKIRLH 365
K S ++ H
Sbjct: 455 GKNFSQAGQLARH 467
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/72 (22%), Positives = 29/72 (40%)
Frame = +3
Query: 168 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEFINDHIREVKNGFFCEYCNKYISGP 347
C C F ++ ++H+ KN+ + I + E + C CN+ P
Sbjct: 657 CNYCVCKFQSQNSLSKHVLGLHMNKNICFSSKEVRSIQGEVSESLGLYVCIKCNEACESP 716
Query: 348 TKIRLHILENTH 383
+++ H LE H
Sbjct: 717 SELETH-LEAVH 727
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,560,834
Number of Sequences: 59808
Number of extensions: 488846
Number of successful extensions: 1510
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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