Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0979
(578 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 221 4e-59
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 94 2e-20
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 83 2e-17
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 78 1e-15
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 74 2e-14
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 52 8e-08
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 42 7e-05
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 41 1e-04
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 38 8e-04
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 37 0.002
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 37 0.002
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 36 0.004
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 33 0.023
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 33 0.023
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 33 0.040
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 32 0.053
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.37
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 0.49
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 1.5
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 27 2.6
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 26 3.5
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 3.5
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 26 4.6
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 25 6.1
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar... 25 6.1
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 6.1
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 6.1
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 8.0
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 8.0
SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.0
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 8.0
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 221 bits (541), Expect = 4e-59
Identities = 102/156 (65%), Positives = 132/156 (84%)
Frame = +2
Query: 110 REKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQL 289
R+ A + Y+ L++H+E +S+LK+ R +DL K+YDK+E+D+K+LQSVGQI+GEVLKQL
Sbjct: 4 RDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQL 63
Query: 290 TEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSH 469
E+FIVKA++GPRYVVGCR +D++ L G RV+LDMTTLTIMR LPREVDPLVYNMS
Sbjct: 64 DSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSI 123
Query: 470 EDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFV 577
EDPGD++++ +GGL EQIR+LREVIELPL NPELF+
Sbjct: 124 EDPGDISFAGVGGLNEQIRELREVIELPLKNPELFL 159
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 93.9 bits (223), Expect = 2e-20
Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Frame = +2
Query: 113 EKAFQDYRKKLMEHK----EVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVL 280
E Q Y +K+ + + + L+ Q L + +++ LQ G VGEV+
Sbjct: 14 ENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVI 73
Query: 281 KQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYN 460
K + + K +VK +YVV +D ++K RVAL + +++ LP +VDPLV
Sbjct: 74 KTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSL 133
Query: 461 MSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELF 574
M E D TY +GGL++QI++++EVIELP+ +PELF
Sbjct: 134 MMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELF 171
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 83.4 bits (197), Expect = 2e-17
Identities = 46/149 (30%), Positives = 83/149 (55%), Gaps = 2/149 (1%)
Frame = +2
Query: 134 RKKLMEHKEVESRLKEG--RDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFI 307
R K +E + L+EG ++ K L ++ +++ ++K +QSV ++G+ L+ + + I
Sbjct: 12 RWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAI 71
Query: 308 VKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDV 487
V +T G YVV LD+ LK VAL + ++ LP E D + + ++ DV
Sbjct: 72 VGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDV 131
Query: 488 TYSAIGGLQEQIRQLREVIELPLMNPELF 574
+Y+ +GGL Q +++RE +ELPL +L+
Sbjct: 132 SYADVGGLDVQKQEVREAVELPLTQGDLY 160
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 77.8 bits (183), Expect = 1e-15
Identities = 39/146 (26%), Positives = 81/146 (55%)
Frame = +2
Query: 137 KKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVKA 316
+++ +H +E + +++LK ++ + N + ++ VG L+++ ++ + +
Sbjct: 73 QRIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVG-TLEEIIDDDHAIVS 131
Query: 317 TNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYS 496
T GP Y V +DK+ L+ G V L ++I+ L + DP++ M + +Y+
Sbjct: 132 TAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYA 191
Query: 497 AIGGLQEQIRQLREVIELPLMNPELF 574
IGGL+ QI++++E +ELPL +PEL+
Sbjct: 192 DIGGLESQIQEIKEAVELPLTHPELY 217
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 73.7 bits (173), Expect = 2e-14
Identities = 35/92 (38%), Positives = 53/92 (57%)
Frame = +2
Query: 302 FIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPG 481
+++ ++VV ++ ++ G RV D I LP ++DP V M E+
Sbjct: 115 YVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKP 174
Query: 482 DVTYSAIGGLQEQIRQLREVIELPLMNPELFV 577
DVTY +GG +EQI +LREV+ELPL++PE FV
Sbjct: 175 DVTYGDVGGCKEQIERLREVVELPLLSPERFV 206
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 51.6 bits (118), Expect = 8e-08
Identities = 21/33 (63%), Positives = 27/33 (81%)
Frame = +2
Query: 476 PGDVTYSAIGGLQEQIRQLREVIELPLMNPELF 574
P VT+S+IGGLQ QI Q+R+++ELP NPELF
Sbjct: 273 PSAVTFSSIGGLQAQIAQIRDIVELPFQNPELF 305
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 41.9 bits (94), Expect = 7e-05
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +2
Query: 356 LDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYSAIGGLQEQIRQLR 535
++ +L G + ++ + I+ LP E D V M ++ YS IGGL +QI +L
Sbjct: 139 VEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELF 198
Query: 536 EVIELPLMNPELF 574
E I LP+ + F
Sbjct: 199 EAIVLPMQQADKF 211
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +2
Query: 437 EVDPLVYNMSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELF 574
E +P+ +V Y IGG + Q+ Q+RE++ELPL +P+LF
Sbjct: 205 EGEPINREDEESSLAEVGYDDIGGCRRQMAQIRELVELPLRHPQLF 250
Score = 33.9 bits (74), Expect = 0.017
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +2
Query: 482 DVTYSAIGGLQEQIRQLREVIELPLMNPELFV 577
+V + IGGL+E R+LRE +++P+M E F+
Sbjct: 493 NVRWEDIGGLEEVKRELRETVQMPVMYAEKFL 524
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 38.3 bits (85), Expect = 8e-04
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = +2
Query: 464 SHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELF 574
+ E P D++ S IGGL + I +L E++ +P+ +PE++
Sbjct: 164 NREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVY 200
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/32 (43%), Positives = 27/32 (84%)
Frame = +2
Query: 482 DVTYSAIGGLQEQIRQLREVIELPLMNPELFV 577
++ +++IGGL++ I QL+E++ LPL+ PE+F+
Sbjct: 368 NLDFNSIGGLEDIILQLKEMVMLPLLYPEVFL 399
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 36.7 bits (81), Expect = 0.002
Identities = 13/30 (43%), Positives = 23/30 (76%)
Frame = +2
Query: 485 VTYSAIGGLQEQIRQLREVIELPLMNPELF 574
+++ ++GGL I QL+E++ LPL+ PE+F
Sbjct: 263 LSFESVGGLDNYINQLKEMVMLPLLYPEIF 292
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 95 DMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYD 220
+++PL +AFQD K L + V S+L + + D K+ D
Sbjct: 544 ELKPLLNEAFQDIEKTLQKLMPVASKLNPLEEVMYDDPKEND 585
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 35.9 bits (79), Expect = 0.004
Identities = 20/77 (25%), Positives = 40/77 (51%)
Frame = +2
Query: 83 ASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQ 262
A+ SD++ + + Y ++L + K++ ++ + Q + + ++Y E L ALQ +
Sbjct: 531 ANLSDVKAKVSEIRKAYDEELAKAKQISLDIETNKAQTEQVNREYSILEATLNALQKQNK 590
Query: 263 IVGEVLKQLTEEKFIVK 313
GEVL+Q+ E K
Sbjct: 591 QKGEVLEQVVAESEAAK 607
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 33.5 bits (73), Expect = 0.023
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +2
Query: 86 STSDMEPLREKAFQDYRK-KLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQ 250
S + +E ++K F+ Y+K + E K+ E R+K+ LKD T +K + K+++
Sbjct: 48 SMAQLEHKKQKIFERYKKVRFFERKKAERRIKQLEKSLKDETMDDEKRKQCEKSMR 103
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 33.5 bits (73), Expect = 0.023
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2
Query: 485 VTYSAIGGLQEQIRQLREVIELPLMNPELF 574
V + IGGL+E LR+ ++LPL PELF
Sbjct: 652 VNWDDIGGLEEAKTVLRDTLQLPLQFPELF 681
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 32.7 bits (71), Expect = 0.040
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 482 DVTYSAIGGLQEQIRQLREVIELPLMNPELF 574
DV++ IGG+ E + QL + + PL PE+F
Sbjct: 85 DVSFDDIGGMDEHVNQLLQDVLFPLKYPEVF 115
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 32.3 bits (70), Expect = 0.053
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +2
Query: 113 EKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDL 238
+K +D RKKL E +E ES L+ R++L+ +S NDL
Sbjct: 571 DKLVEDVRKKLQEKEEAESSLRSVRERLEIRISLSVQSINDL 612
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 29.5 bits (63), Expect = 0.37
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +2
Query: 104 PLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQS 253
PL YRK L K+V+ L E + LK L K+ K +ND + L++
Sbjct: 184 PLYPNGQPKYRKILENGKKVKYLLDENGEILKRLVKKEKKLKNDNERLEN 233
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 29.1 bits (62), Expect = 0.49
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 92 SDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLK-ALQSVGQIV 268
S E +RE+ Q KKL + + ++SRL + R Q++ Y S + LK + S+ Q V
Sbjct: 404 SSCETIREEN-QKNIKKLNDAESLKSRLLQSRTQMQTELDSYITSNSQLKDEITSLKQTV 462
Query: 269 GE 274
E
Sbjct: 463 SE 464
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 149 EHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQ 286
E + +R+ + ++Q+KDL+ D DL+ L+S+ V + K+
Sbjct: 1616 ERLSLTTRMLDLQNQVKDLSNIKDSLSEDLRTLRSLEDSVASLQKE 1661
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 26.6 bits (56), Expect = 2.6
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +2
Query: 131 YRKKLMEHKEVESR----LKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTE 295
Y+ K + HKEVE R + EG +L ++ +K++ + LQ Q + LK++ E
Sbjct: 86 YKAKRLSHKEVERRRREAISEGIKELANIVPGCEKNKGSI--LQRTAQYI-RSLKEMEE 141
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 264 ICPTLCRAFRSFSLLSYCLVKSFSWSRP 181
+ PTL R RS S+L + L KSF+ + P
Sbjct: 410 VTPTLHRNERSMSVLPFQLAKSFTSALP 437
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = +2
Query: 185 RDQLKDLTKQYDKSENDLKAL-QSVGQIVGEVL-KQLTEEKFIVKAT 319
RD+L+DL+++ + +NDL+ L Q+V E++ LT+ K I++ +
Sbjct: 40 RDELEDLSEEDLQLKNDLELLVQAVQDATPELVGSSLTQLKEIIRTS 86
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 4.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 482 DVTYSAIGGLQEQIRQLREVIELPLMNPELF 574
+V + I GL+ L+E + LP+ P+LF
Sbjct: 125 NVRWDDIAGLENAKEALKETVLLPIKLPQLF 155
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 6.1
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -2
Query: 406 GHVKGNSCSSFKLV---LVKLPTTANNVARAISSFYNKFFFCELFQDFSNY 263
GH+KGN+ KLV L L NNV ++ + + + + F + NY
Sbjct: 385 GHMKGNTLLDAKLVEDCLATLGYLQNNVFSFLNCLFEEKKYMKHFISWLNY 435
>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 95 DMEPLREKAFQDYRKKLMEHKEV 163
D+ L ++ F+D RK L EH+ V
Sbjct: 58 DLNNLSDEQFEDIRKALFEHQVV 80
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.4 bits (53), Expect = 6.1
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Frame = -2
Query: 406 GHVKGNSCSSFKLVLVKLPTTANNVARAISSFYNK-----FFFCELFQDFSNYL 260
GH+ C FK V N+V +S +Y K FF C L + SN L
Sbjct: 1429 GHLMHLGC--FKNYYVARSMYRNDVTAGLSEYYYKYSTAKFFMCPLCRSLSNVL 1480
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 550 QFNHLSQLSNLFLKTSYGRIGHITRI 473
Q + +SQ+++L +Y R HITR+
Sbjct: 671 QISRISQVNSLLNDYNYNRQSHITRV 696
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 8.0
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +2
Query: 92 SDMEPLREKAFQDYRKKLME-HKEV-ESRLKEGRDQLKDLTKQYDKSENDLKA 244
S ++ + KA ++ RK+ E KE+ +SRL+E + K L K + ++LKA
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEIRQSRLQEEERKKKKLAKYTEVIISNLKA 403
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.0 bits (52), Expect = 8.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 482 DVTYSAIGGLQEQIRQLREVIELPLMNPELF 574
+V + I GL+ L+E + P + P+LF
Sbjct: 455 EVHWDDISGLEFAKHSLKEAVVYPFLRPDLF 485
>SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 117
Score = 25.0 bits (52), Expect = 8.0
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Frame = +2
Query: 107 LREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSE-----NDLKALQSVGQIVG 271
LRE FQ + K + + L RDQ+ DLTK E N LK + S ++
Sbjct: 17 LRENVFQPVIDE--RTKRLSAHL---RDQVNDLTKSSSSKEEGIADNSLKEVSS-SEVSD 70
Query: 272 EVLKQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTR 388
V ++ + K +T+GPR R + K LK G R
Sbjct: 71 NVGMEVDQPKV---STSGPR--DNNRNKWAKKHLKKGKR 104
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.0 bits (52), Expect = 8.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 134 RKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKA 244
R +L++ + KE D LK +YD+ EN+LKA
Sbjct: 396 RNQLLQINRNINSTKENSDYLKT---EYDEMENELKA 429
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,219,470
Number of Sequences: 5004
Number of extensions: 43045
Number of successful extensions: 162
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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