Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0979
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    27   0.10 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.8  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   5.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   5.0  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   6.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   6.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   6.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.8  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 27.5 bits (58), Expect = 0.10
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 206 TKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKNKL 373
           T + DKSE  L   Q+ G I     + L+    I K   GP +  G R ++  N L
Sbjct: 100 TSRLDKSEISLATKQACGFIDNIDKRNLSVTSMIQKRALGPSFSTGERCRISSNFL 155


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 107 LREKAFQDYRKKLMEHKEVESR 172
           +RE+  + YR+ L+EHK+  +R
Sbjct: 139 IREQTEEMYREMLLEHKKRRAR 160


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +3

Query: 117  RPSRITERNSWSIRKSSQDSKKVVTN*KI*PNNMTRVKMI 236
            +P  +  R++ +   + +D+  VVT  K   +N+T  K +
Sbjct: 983  KPPSVVSRSTQTSANNDKDTNAVVTQSKEARDNITATKQL 1022


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 485 VTYSAIGGLQEQIRQLREVIELPLMNPEL 571
           +T + +GG    I Q+  +I+LP   P +
Sbjct: 5   MTGTWVGGFCHSIIQIPVIIQLPFCGPNV 33


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 230 NDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVV 340
           N L    S   +  +VLK+    K +VK   GP+ V+
Sbjct: 55  NALDLFGSPDAMFSQVLKKAENFKDVVKIWVGPKLVI 91


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 340 NNVARAISSFYNKF 299
           NNV + ++ FYN F
Sbjct: 521 NNVPKKLNMFYNNF 534


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 340 NNVARAISSFYNKF 299
           NNV + ++ FYN F
Sbjct: 521 NNVPKKLNMFYNNF 534


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 335 VVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHED 475
           +V C   +DK  +K   +V    T   I R L +E   ++ +  H+D
Sbjct: 431 IVKCTDFVDKAMVKQYVKVKHSATLGYISRVLEKEPYVIILDDEHDD 477


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 311 LQ*IFLL*AVSRLLQLFVQHFVGLSDHFHSCHIVWSNLLVGHDL 180
           LQ IF+L  +  L+        G+SD   +     S +L G+D+
Sbjct: 7   LQQIFILLQMIHLIAWASLENTGISDRLENVTQTISRILDGYDI 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,210
Number of Sequences: 438
Number of extensions: 3251
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)