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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0979
         (578 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4...   229   8e-61
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun...   229   8e-61
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)     99   2e-21
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta...    98   4e-21
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2...    82   3e-16
At2g20140.1 68415.m02353 26S protease regulatory complex subunit...    82   3e-16
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3...    80   1e-15
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta...    79   2e-15
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1...    78   4e-15
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5...    48   6e-06
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put...    47   8e-06
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)...    43   2e-04
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ...    41   5e-04
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ...    41   5e-04
At1g05910.1 68414.m00620 cell division cycle protein 48-related ...    36   0.020
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond...    35   0.045
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond...    33   0.10 
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains...    33   0.10 
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains...    33   0.18 
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro...    32   0.24 
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains...    32   0.32 
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains...    32   0.32 
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains...    31   0.42 
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains...    31   0.42 
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains...    31   0.73 
At5g60070.1 68418.m07532 ankyrin repeat family protein contains ...    30   0.97 
At3g49840.1 68416.m05449 proline-rich family protein contains pr...    30   1.3  
At2g33793.1 68415.m04145 expressed protein                             30   1.3  
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai...    29   1.7  
At1g51940.1 68414.m05855 protein kinase family protein / peptido...    29   1.7  
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains...    29   2.2  
At1g78700.1 68414.m09173 brassinosteroid signalling positive reg...    29   2.2  
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c...    29   3.0  
At5g53450.2 68418.m06643 protein kinase family protein contains ...    28   3.9  
At5g53450.1 68418.m06642 protein kinase family protein contains ...    28   3.9  
At5g48600.1 68418.m06011 structural maintenance of chromosomes (...    28   3.9  
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t...    28   3.9  
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains...    28   3.9  
At5g48660.1 68418.m06022 expressed protein ; expression supporte...    28   5.2  
At5g11260.1 68418.m01315 bZIP protein HY5 (HY5) identical to HY5...    28   5.2  
At1g68780.1 68414.m07862 leucine-rich repeat family protein cont...    28   5.2  
At1g62630.1 68414.m07066 disease resistance protein (CC-NBS-LRR ...    28   5.2  
At3g54670.1 68416.m06049 structural maintenance of chromosomes (...    27   6.8  
At3g48670.2 68416.m05314 XH/XS domain-containing protein / XS zi...    27   6.8  
At3g48670.1 68416.m05313 XH/XS domain-containing protein / XS zi...    27   6.8  
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m...    27   6.8  
At5g52330.1 68418.m06494 meprin and TRAF homology domain-contain...    27   9.0  
At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical t...    27   9.0  
At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical t...    27   9.0  
At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR...    27   9.0  
At2g45550.1 68415.m05664 cytochrome P450 family protein                27   9.0  
At2g28650.1 68415.m03483 exocyst subunit EXO70 family protein co...    27   9.0  
At2g16890.2 68415.m01944 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.0  
At2g16890.1 68415.m01943 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.0  
At1g66120.1 68414.m07504 acyl-activating enzyme 11 (AAE11) simil...    27   9.0  
At1g62740.1 68414.m07081 stress-inducible protein, putative simi...    27   9.0  
At1g56660.1 68414.m06516 expressed protein                             27   9.0  
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains...    27   9.0  

>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
           gb|AAF22524.1
          Length = 399

 Score =  229 bits (561), Expect = 8e-61
 Identities = 104/156 (66%), Positives = 133/156 (85%)
 Frame = +2

Query: 110 REKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQL 289
           R  A  +YRKKL++HKE+ESR++  R+ L+   K+++K+E+DLK+LQSVGQI+GEVL+ L
Sbjct: 11  RTAAVSEYRKKLLQHKELESRVRTARENLRGAKKEFNKTEDDLKSLQSVGQIIGEVLRPL 70

Query: 290 TEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSH 469
             E+ IVKA++GPRYVVGCR ++DK KL  GTRV LDMTTLTIMR LPREVDP+VYNM H
Sbjct: 71  DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLH 130

Query: 470 EDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFV 577
           EDPG+++YSA+GGL +QIR+LRE IELPLMNPELF+
Sbjct: 131 EDPGNISYSAVGGLGDQIRELRESIELPLMNPELFL 166


>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
           p42D, putative similar to 26S proteasome regulatory
           complex subunit p42D [Drosophila melanogaster]
           gi|6434958|gb|AAF08391
          Length = 399

 Score =  229 bits (561), Expect = 8e-61
 Identities = 105/156 (67%), Positives = 132/156 (84%)
 Frame = +2

Query: 110 REKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQL 289
           R  A  DYRKKL+ HKE+ESR++  R+ L+   K+++K+E+DLK+LQSVGQI+GEVL+ L
Sbjct: 11  RTAAVTDYRKKLLHHKELESRVRTARENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPL 70

Query: 290 TEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSH 469
             E+ IVKA++GPRYVVGCR ++DK KL  GTRV LDMTTLTIMR LPREVDP+VYNM H
Sbjct: 71  DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLH 130

Query: 470 EDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFV 577
           EDPG+++YSA+GGL +QIR+LRE IELPLMNPELF+
Sbjct: 131 EDPGNISYSAVGGLGDQIRELRESIELPLMNPELFL 166


>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
          Length = 419

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 57/164 (34%), Positives = 87/164 (53%)
 Frame = +2

Query: 83  ASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQ 262
           A+    E L++   Q   +   + ++  + L     Q  +L  +      +L+ LQ  G 
Sbjct: 24  AAAKQGEGLKQYYLQHIHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGS 83

Query: 263 IVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREV 442
            VGEV+K + + K +VK     +YVV   + +D  K+   TRVAL   +  +   LP +V
Sbjct: 84  YVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKV 143

Query: 443 DPLVYNMSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELF 574
           DPLV  M  E   D TY  IGGL +QI++++EVIELP+ +PELF
Sbjct: 144 DPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELF 187


>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
           putative almost identical to 26S proteasome AAA-ATPase
           subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
           almost identical to a member of conserved Sug1 CAD
           family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
          Length = 419

 Score = 97.9 bits (233), Expect = 4e-21
 Identities = 58/150 (38%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
 Frame = +2

Query: 128 DYRKKLMEHKEVE-SRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKF 304
           D  ++L   K    +RL+  R++L    +       +L+ LQ  G  VGEV+K + + K 
Sbjct: 41  DELQRLQREKSYNLNRLEAQRNELNSRVRML---REELQLLQEPGSYVGEVVKVMGKNKV 97

Query: 305 IVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGD 484
           +VK     +YVV   + +D  KL   TRVAL   +  +   LP +VDPLV  M  E   D
Sbjct: 98  LVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPD 157

Query: 485 VTYSAIGGLQEQIRQLREVIELPLMNPELF 574
            TY  IGGL +QI++++EVIELP+ +PELF
Sbjct: 158 STYDMIGGLDQQIKEIKEVIELPIKHPELF 187


>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
           almost identical to 26S proteasome AAA-ATPase subunit
           RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
           melanogaster 26S proteasome subunit 4 ATPase,
           PID:g1066065
          Length = 443

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 42/146 (28%), Positives = 83/146 (56%)
 Frame = +2

Query: 137 KKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVKA 316
           +++ ++  +E      +++LK   ++ ++  + +  L+     VG + + + E   IV +
Sbjct: 69  ERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSS 128

Query: 317 TNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYS 496
           + GP Y VG    +DK++L+ G  + +    L+++  L  EVDP+V  M  E     +Y+
Sbjct: 129 SVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYA 188

Query: 497 AIGGLQEQIRQLREVIELPLMNPELF 574
            IGGL+ QI++++E +ELPL +PEL+
Sbjct: 189 DIGGLEAQIQEIKEAVELPLTHPELY 214


>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
           putative similar to Swiss-Prot:P48601 26S protease
           regulatory subunit 4 (P26S4) [Drosophila melanogaster]
          Length = 443

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 42/146 (28%), Positives = 83/146 (56%)
 Frame = +2

Query: 137 KKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVKA 316
           +++ ++  +E      +++LK   ++ ++  + +  L+     VG + + + E   IV +
Sbjct: 69  ERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSS 128

Query: 317 TNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYS 496
           + GP Y VG    +DK++L+ G  + +    L+++  L  EVDP+V  M  E     +Y+
Sbjct: 129 SVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYA 188

Query: 497 AIGGLQEQIRQLREVIELPLMNPELF 574
            IGGL+ QI++++E +ELPL +PEL+
Sbjct: 189 DIGGLEAQIQEIKEAVELPLTHPELY 214


>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
           identical to 26S proteasome AAA-ATPase subunit RPT3
           GI:6652882 from [Arabidopsis thaliana]
          Length = 408

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 47/166 (28%), Positives = 90/166 (54%)
 Frame = +2

Query: 77  MPASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSV 256
           M  ST+D E L  +     R+  +E  +++      +D+ K+L ++  +++ ++K +QSV
Sbjct: 20  MDLSTADEEDLYGRLKSLERQ--LEFTDIQEEYV--KDEQKNLKRELLRAQEEVKRIQSV 75

Query: 257 GQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPR 436
             ++G+ ++ + +   IV +T G  Y V     +++  LK    VAL   +  ++  LP 
Sbjct: 76  PLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPP 135

Query: 437 EVDPLVYNMSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELF 574
           E D  +  +S  +  DV+Y+ IGG   Q +++RE +ELPL + EL+
Sbjct: 136 EADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELY 181


>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
           putative similar to  26S proteasome AAA-ATPase subunit
           RPT1 SP:Q41365 from [Spinacia oleracea]
          Length = 464

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
 Frame = +2

Query: 272 EVLKQLTEE-KFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDP 448
           +++   TE+ K++V      +YVVG   +     ++ G RV +D     I   LP ++DP
Sbjct: 130 QIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDP 189

Query: 449 LVYNMSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFV 577
            V  M+ E+  D TYS IGG +EQI ++REV+ELP+++PE FV
Sbjct: 190 SVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFV 232


>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
           similar to 26S proteasome ATPase subunit GI:1395190 from
           [Spinacia oleracea]
          Length = 426

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 37/103 (35%), Positives = 64/103 (62%), Gaps = 1/103 (0%)
 Frame = +2

Query: 272 EVLKQLTEE-KFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDP 448
           +++   TE+ K+++      ++VVG   ++    ++ G RV +D     I   LP ++DP
Sbjct: 93  KIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDP 152

Query: 449 LVYNMSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFV 577
            V  M+ E+  DVTY+ +GG +EQI ++REV+ELP+++PE FV
Sbjct: 153 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFV 195


>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
           identical to GB:AAF22525 GI:6652886 from [Arabidopsis
           thaliana]
          Length = 424

 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 26/73 (35%), Positives = 41/73 (56%)
 Frame = +2

Query: 356 LDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYSAIGGLQEQIRQLR 535
           +D + LK G  V ++  +  I+  LP E D  V  M  ++     Y+ IGGL++QI++L 
Sbjct: 125 VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELV 184

Query: 536 EVIELPLMNPELF 574
           E I LP+ + E F
Sbjct: 185 EAIVLPMTHKERF 197


>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
           putative identical to SP:O04019 from [Arabidopsis
           thaliana]
          Length = 423

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 26/73 (35%), Positives = 41/73 (56%)
 Frame = +2

Query: 356 LDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYSAIGGLQEQIRQLR 535
           +D + LK G  V ++  +  I+  LP E D  V  M  ++     Y+ IGGL++QI++L 
Sbjct: 124 VDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELV 183

Query: 536 EVIELPLMNPELF 574
           E I LP+ + E F
Sbjct: 184 EAIVLPMTHKEQF 196


>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
           (CDC48) identical to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}
          Length = 809

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 16/31 (51%), Positives = 26/31 (83%)
 Frame = +2

Query: 482 DVTYSAIGGLQEQIRQLREVIELPLMNPELF 574
           DV Y  +GG+++Q+ Q+RE++ELPL +P+LF
Sbjct: 203 DVGYDDVGGVRKQMAQIRELVELPLRHPQLF 233



 Score = 31.5 bits (68), Expect = 0.42
 Identities = 12/31 (38%), Positives = 23/31 (74%)
 Frame = +2

Query: 482 DVTYSAIGGLQEQIRQLREVIELPLMNPELF 574
           +V+++ IGGL+   R+L+E ++ P+ +PE F
Sbjct: 476 NVSWNDIGGLENVKRELQETVQYPVEHPEKF 506


>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain; supporting cDNA
           gi|26449351|dbj|AK117125.1|
          Length = 810

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 15/31 (48%), Positives = 26/31 (83%)
 Frame = +2

Query: 482 DVTYSAIGGLQEQIRQLREVIELPLMNPELF 574
           +V Y  +GG+++Q+ Q+RE++ELPL +P+LF
Sbjct: 203 EVGYDDVGGVRKQMAQIRELVELPLRHPQLF 233



 Score = 31.1 bits (67), Expect = 0.56
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +2

Query: 482 DVTYSAIGGLQEQIRQLREVIELPLMNPELF 574
           +V++  IGGL+   R+L+E ++ P+ +PE F
Sbjct: 476 NVSWEDIGGLENVKRELQETVQYPVEHPEKF 506


>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain
          Length = 815

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 15/31 (48%), Positives = 26/31 (83%)
 Frame = +2

Query: 482 DVTYSAIGGLQEQIRQLREVIELPLMNPELF 574
           +V Y  +GG+++Q+ Q+RE++ELPL +P+LF
Sbjct: 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLF 234



 Score = 31.1 bits (67), Expect = 0.56
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +2

Query: 482 DVTYSAIGGLQEQIRQLREVIELPLMNPELF 574
           +V++  IGGL+   R+L+E ++ P+ +PE F
Sbjct: 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKF 507


>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
           CDC48-related similar to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}; contains Pfam
           profiles PF00004: ATPase AAA family, PF00439:
           Bromodomain
          Length = 1210

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 482 DVTYSAIGGLQEQIRQLREVIELPLMNPELF 574
           D+ +  IGGL E I  L+E++  PL+ PE F
Sbjct: 377 DINFDDIGGLSEYINDLKEMVFFPLLYPEFF 407


>At4g27680.1 68417.m03980 MSP1 protein, putative /
           intramitochondrial sorting protein, putative similar to
           Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
           [Saccharomyces cerevisiae]; contains Pfam domain,
           PF00004: ATPase, AAA family
          Length = 398

 Score = 34.7 bits (76), Expect = 0.045
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = +2

Query: 443 DPLVYNMSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELF 574
           D +  ++ + D  DV + +IGGL+   + L E++ LPL  PELF
Sbjct: 67  DVIACDVINPDHIDVEFGSIGGLETIKQALYELVILPLKRPELF 110


>At5g53540.1 68418.m06653 MSP1 protein, putative /
           intramitochondrial sorting protein, putative similar to
           Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
           [Saccharomyces cerevisiae]; contains Pfam domain,
           PF00004: ATPase, AAA family
          Length = 403

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +2

Query: 482 DVTYSAIGGLQEQIRQLREVIELPLMNPELF 574
           DV + +IGGL+   + L E++ LPL  PELF
Sbjct: 83  DVEFGSIGGLESIKQALYELVILPLKRPELF 113


>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
           Pfam profile PF00004: ATPase, AAA family
          Length = 1122

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +2

Query: 482 DVTYSAIGGLQEQIRQLREVIELPLMNPELF 574
           DVT+  IG L++    L+E++ LPL  PELF
Sbjct: 816 DVTFDDIGALEKVKDILKELVMLPLQRPELF 846


>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 726

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 485 VTYSAIGGLQEQIRQLREVIELPLMNPELF 574
           VT++ IG L E    L+E++ LPL  P+LF
Sbjct: 411 VTFADIGSLDETKESLQELVMLPLRRPDLF 440


>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
           protein similar to HMG protein [Arabidopsis thaliana]
           GI:2832361; contains Pfam profile PF00505: HMG (high
           mobility group) box
          Length = 151

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 194 LKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEK 301
           L D  KQY +   D+K+++ +G+  GE  K +T E+
Sbjct: 74  LDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEE 109


>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 829

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 482 DVTYSAIGGLQEQIRQLREVIELPLMNPELF 574
           +VT+  IG L E    L+E++ LPL  P+LF
Sbjct: 517 NVTFKDIGALDEIKESLQELVMLPLRRPDLF 547


>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 824

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 482 DVTYSAIGGLQEQIRQLREVIELPLMNPELF 574
           +VT+  IG L E    L+E++ LPL  P+LF
Sbjct: 512 NVTFKDIGALDEIKESLQELVMLPLRRPDLF 542


>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 640

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 15/186 (8%)
 Frame = +2

Query: 62  FKLFTMPASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLK 241
           +KLFT         P  E   + ++K+L E +    R+   R  + +L K  ++ E    
Sbjct: 201 YKLFTNVMRLHP--PKEEDTLRLFKKQLGEDR----RIVISRSNINELLKALEEHELLCT 254

Query: 242 ALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIM 421
            L  V    G +L +   EK I  A N   Y+  C   L K       R +L+++   + 
Sbjct: 255 DLYQVNTD-GVILTKQKAEKAIGWAKN--HYLASCPVPLVKGGRLSLPRESLEISIARLR 311

Query: 422 RHLPREVDPL--VYNMSHED-----------PGD--VTYSAIGGLQEQIRQLREVIELPL 556
           +     + P   + N++ ++           PG+  V +  IG L++  + L E++ LP+
Sbjct: 312 KLEDNSLKPSQNLKNIAKDEYERNFVSAVVAPGEIGVKFEDIGALEDVKKALNELVILPM 371

Query: 557 MNPELF 574
             PELF
Sbjct: 372 RRPELF 377


>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
            domain, PF00004: ATPase, AAA family; similar to
            mitochondrial sorting protein 1 (MSP1) (TAT-binding
            homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
          Length = 1252

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 485  VTYSAIGGLQEQIRQLREVIELPLMNPELF 574
            V++S IG L+     L+E++ LPL  PELF
Sbjct: 947  VSFSDIGALENVKDTLKELVMLPLQRPELF 976


>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
            domain, PF00004: ATPase, AAA family; similar to Spastin
            (Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
            (Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
            mitochondrial sorting protein 1 (MSP1) protein
            (TAT-binding homolog 4) (Swiss-Prot:P28737)
            [Saccharomyces cerevisiae]
          Length = 1265

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 485  VTYSAIGGLQEQIRQLREVIELPLMNPELF 574
            V++  IG L+     L+E++ LPL  PELF
Sbjct: 960  VSFDDIGALENVKETLKELVMLPLQRPELF 989


>At5g60070.1 68418.m07532 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 548

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
 Frame = +2

Query: 155 KEVESRLKEGRDQLKD-LTKQYDKSENDLKALQSVG--QIVGEVLKQLTEEKFIVKATNG 325
           KE+ S   E  D+L+D L KQ    E  L      G   +V E++K    E    KA NG
Sbjct: 49  KEILSNHMESEDELRDLLRKQNQCGETALYVAAEYGDADVVAELIKYYDLEDAETKARNG 108

Query: 326 --PRYVVGCRRQLDKNKLKGGTRVALDMT 406
             P ++   + +LD  ++       L MT
Sbjct: 109 FDPFHIAAKQGELDVLRVLMEEHPELSMT 137


>At3g49840.1 68416.m05449 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 606

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
 Frame = +2

Query: 65  KLFTMPASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQ-LKDLTKQYDK--SEND 235
           KL T+P S SD+ P       + R+KL + +E++   KE  +  LK+L    ++  S ++
Sbjct: 383 KLRTVPLSESDIFPSSFHKTPEGRRKLTK-EELQKFTKESTENALKELVSSPEEGSSGSE 441

Query: 236 LKALQSVGQIVGEVLKQLTEEKFIVKATNGP 328
            +A +   + VGE  K+  +++   K  N P
Sbjct: 442 KQAARGTSEPVGECTKK-KKQRVRYKERNKP 471


>At2g33793.1 68415.m04145 expressed protein
          Length = 212

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 92  SDMEPLREKAFQDYRKKLMEH-KEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIV 268
           S ++  REKA +D RKK  E    V + +K   D+LK  +K   + +N  KAL    +  
Sbjct: 45  SALQQFREKAHEDGRKKKEESISSVSTEVKSKIDELK--SKLEKERQNFSKALSKSSKEC 102

Query: 269 GEVLK 283
             +LK
Sbjct: 103 ENILK 107


>At3g19670.1 68416.m02492 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
           GI:3341980; contains Pfam profiles PF01846: FF domain,
           PF00397: WW domain
          Length = 960

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +2

Query: 86  STSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSEN 232
           ST   E  R++ F+DY   L   KE  +R+K+ +   +D+ +++DK  +
Sbjct: 797 STIGDESFRKRCFEDYVSLL---KEQSNRIKQNKKVPEDVREEHDKGRD 842


>At1g51940.1 68414.m05855 protein kinase family protein /
           peptidoglycan-binding LysM domain-containing protein
           contains protein kinases ATP-binding region signature,
           PROSITE:PS00107
          Length = 651

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -3

Query: 234 SFSLLSYCLVKSFSWSRPSLSLDSTSLCS--MSFFL*SWKAFSLNGSMSDVL 85
           +F +    L+ SFS S+P    D+T LCS  ++F     ++FS+  SM DVL
Sbjct: 4   TFYIFFLSLLPSFSSSKPMNCSDTTRLCSSFLAFKPNQNQSFSVIQSMFDVL 55


>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 439

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 476 PGD--VTYSAIGGLQEQIRQLREVIELPLMNPELF 574
           PG+  V +  IG L+   + L E++ LP+  PELF
Sbjct: 142 PGEIGVKFDDIGALEHVKKTLNELVILPMRRPELF 176


>At1g78700.1 68414.m09173 brassinosteroid signalling positive
           regulator-related contains similarity to BZR1 protein
           [Arabidopsis thaliana] gi|20270971|gb|AAM18490
          Length = 325

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 272 EVLKQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVA 394
           EVLK L  E   +   +G  Y  GC R +++ ++ GG+  A
Sbjct: 50  EVLKALCNEAGWIVEPDGTTYRKGCSRPVERMEIGGGSATA 90


>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 673

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/51 (25%), Positives = 30/51 (58%)
 Frame = +2

Query: 155 KEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFI 307
           +E+++RLK+ +  L + T   D   +  + L+++GQ++ +   QL + K +
Sbjct: 245 QELQARLKDSQRVLGEATSDADLPRSAHEKLRAMGQVLAKAKMQLYDCKLV 295


>At5g53450.2 68418.m06643 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 590

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = +2

Query: 101 EPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVL 280
           E L EK   +  KK++  KE  S L       K ++ + + + N    + S G ++GEV 
Sbjct: 489 EGLAEKLETEKWKKVVPFKEFPSSLPVA----KLVSGEIEVTMNMNDHIDSPGSVIGEVR 544

Query: 281 KQLTEEKF 304
           KQ+  E F
Sbjct: 545 KQIPPEMF 552


>At5g53450.1 68418.m06642 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 670

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = +2

Query: 101 EPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVL 280
           E L EK   +  KK++  KE  S L       K ++ + + + N    + S G ++GEV 
Sbjct: 569 EGLAEKLETEKWKKVVPFKEFPSSLPVA----KLVSGEIEVTMNMNDHIDSPGSVIGEVR 624

Query: 281 KQLTEEKF 304
           KQ+  E F
Sbjct: 625 KQIPPEMF 632


>At5g48600.1 68418.m06011 structural maintenance of chromosomes
           (SMC) family protein similar to SP|P50532 Chromosome
           assembly protein XCAP-C {Xenopus laevis}; contains Pfam
           profiles PF02483: SMC family C-terminal domain, PF02463:
           RecF/RecN/SMC N terminal domain
          Length = 1241

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
 Frame = +2

Query: 125 QDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQ----SVGQIVGEVLKQLT 292
           +D +    + K++E +L++   ++ D+TK+ + S N +  LQ     + +++ +  K+L 
Sbjct: 344 EDLKHVKQKIKKLEDKLEKDSSKIGDMTKESEDSSNLIPKLQENIPKLQKVLLDEEKKLE 403

Query: 293 EEKFIVKA-TNGPR 331
           E K I K  T G R
Sbjct: 404 EIKAIAKVETEGYR 417


>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
           SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
           GI:14279543; contains Pfam profiles PF02483: SMC family
           C-terminal domain, PF02463: RecF/RecN/SMC N terminal
           domain
          Length = 1171

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +2

Query: 137 KKLMEH-KEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVK 313
           K + +H K  E RLK+    +K L  +   S  DLK  ++V + +    + +T+E+  +K
Sbjct: 773 KSIKDHDKNREGRLKDLEKNIKTLKARIQASSKDLKGHENVRERLVMEQEAVTQEQSYLK 832

Query: 314 A 316
           +
Sbjct: 833 S 833


>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 1025

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 485 VTYSAIGGLQEQIRQLREVIELPLMNPELF 574
           VT+  IG L+     L+E++ LP   PELF
Sbjct: 732 VTFDDIGALENVKDTLKELVMLPFQWPELF 761


>At5g48660.1 68418.m06022 expressed protein ; expression supported
           by MPSS
          Length = 219

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/53 (22%), Positives = 30/53 (56%)
 Frame = +2

Query: 92  SDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQ 250
           ++++   EKA ++ ++  ++   +  RLK+   + K+  K+ + +E  + ALQ
Sbjct: 137 TELKEKEEKASKEIKQLQVKLSSITERLKKAETESKEKEKKLETAETHVTALQ 189


>At5g11260.1 68418.m01315 bZIP protein HY5 (HY5) identical to HY5
           protein GI:2251085 from [Arabidopsis thaliana]
          Length = 168

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 173 LKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEK 301
           L E  +++KDL  +  + E  L  LQ+  Q++  +LK  T  K
Sbjct: 113 LSELENRVKDLENKNSELEERLSTLQNENQMLRHILKNTTGNK 155


>At1g68780.1 68414.m07862 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to disease
           resistance protein [Lycopersicon esculentum]
           gi|3894383|gb|AAC78591
          Length = 432

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 19/59 (32%), Positives = 34/59 (57%)
 Frame = +2

Query: 395 LDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPEL 571
           LD++   +   LPRE++ L  N++  D  +   S  GGL ++I+++  ++EL L N  L
Sbjct: 248 LDLSNNYLEGKLPRELESLK-NLTLLDLRNNRLS--GGLSKEIQEMTSLVELVLSNNRL 303


>At1g62630.1 68414.m07066 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 893

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
 Frame = +2

Query: 110 REKAFQDYRKKLMEHKEVE-SRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQ 286
           R    +D    L+  ++VE  RL   R   K+LT  Y   ++    L+ V ++ GEV   
Sbjct: 75  RVATVEDIIITLLRDRDVEIQRLCLCRFCSKNLTTSYRYGKSVFLRLREVEKLKGEVFGV 134

Query: 287 LTEEKFIVKATNGPRY--VVGCRRQLDK 364
           +TE+         P    +VG ++ LDK
Sbjct: 135 ITEQASTSAFEERPLQPTIVGQKKMLDK 162


>At3g54670.1 68416.m06049 structural maintenance of chromosomes
           (SMC) family protein similar to SMC1 protein [Bos
           taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
           protein) [Xenopus laevis] GI:3328231; contains Pfam
           profiles PF02483: SMC family C-terminal domain, PF02463:
           RecF/RecN/SMC N terminal domain
          Length = 1257

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 158 EVESRLKEGRDQLKDLTKQYDKSENDLKALQSV 256
           ++++R+ E  DQL DLT +  ++E D +  Q+V
Sbjct: 478 KLKTRIAELEDQLSDLTAERYENERDSRLTQAV 510


>At3g48670.2 68416.m05314 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 647

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +2

Query: 137 KKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEK 301
           K + E  E E+R +E   Q  +L +  ++ + D+K ++ +  +  E L QL EEK
Sbjct: 251 KTIAELTEEEARKQELLVQ--NLRQLVEEKKKDMKEIEELCSVKSEELNQLMEEK 303


>At3g48670.1 68416.m05313 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 647

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +2

Query: 137 KKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEK 301
           K + E  E E+R +E   Q  +L +  ++ + D+K ++ +  +  E L QL EEK
Sbjct: 251 KTIAELTEEEARKQELLVQ--NLRQLVEEKKKDMKEIEELCSVKSEELNQLMEEK 303


>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
           myosin heavy chain (GI:1850913) [Entamoeba histolytica];
           similar to Intracellular protein transport protein USO1
           (Swiss-Prot:P25386) [Saccharomyces cerevisiae]
          Length = 555

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 149 EHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVK 313
           EH+E+  +LKE  +   +L  + +K  ++ K L    ++ GE    L ++   VK
Sbjct: 154 EHQEILKKLKESDEICGNLRVETEKLTSENKELNEKLEVAGETESDLNQKLEDVK 208


>At5g52330.1 68418.m06494 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 397

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 117 RPSRITERNSWSIRKSSQDSKK 182
           +PS +  +N+W I+K SQ SK+
Sbjct: 13  KPSELYGKNTWKIKKFSQISKR 34


>At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical to
            kinesin-like protein [Arabidopsis thaliana] GI:27260890;
            contains Pfam profile PF00225: Kinesin motor domain
          Length = 1035

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 5/141 (3%)
 Frame = +2

Query: 140  KLMEHKEVESRLKEGRD-QLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVKA 316
            ++ +  E   + K  R+ +L  L K+  KSE +   LQ++ Q    VL++ TEE     A
Sbjct: 636  RMKQEAEQFRQWKASREKELLQLRKEGRKSEYERHKLQALNQRQKMVLQRKTEE--AAMA 693

Query: 317  TNGPRYVVGCRRQLDKNKLKGGTRVALDMTT--LTIMRHLPREVDPL--VYNMSHEDPGD 484
            T   + ++  R+   +    G      +  T   ++ R L  E++ +  V+ + HE    
Sbjct: 694  TKRLKELLEARKSSPREHSAGTNGFGTNGQTNEKSLQRWLDHELEVMVNVHEVRHEYEKQ 753

Query: 485  VTYSAIGGLQEQIRQLREVIE 547
                A   L E++  LR+V E
Sbjct: 754  SHVRA--ALAEELAVLRQVDE 772


>At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical to
            kinesin-like protein [Arabidopsis thaliana] GI:27260890;
            contains Pfam profile PF00225: Kinesin motor domain
          Length = 1035

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 5/141 (3%)
 Frame = +2

Query: 140  KLMEHKEVESRLKEGRD-QLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVKA 316
            ++ +  E   + K  R+ +L  L K+  KSE +   LQ++ Q    VL++ TEE     A
Sbjct: 636  RMKQEAEQFRQWKASREKELLQLRKEGRKSEYERHKLQALNQRQKMVLQRKTEE--AAMA 693

Query: 317  TNGPRYVVGCRRQLDKNKLKGGTRVALDMTT--LTIMRHLPREVDPL--VYNMSHEDPGD 484
            T   + ++  R+   +    G      +  T   ++ R L  E++ +  V+ + HE    
Sbjct: 694  TKRLKELLEARKSSPREHSAGTNGFGTNGQTNEKSLQRWLDHELEVMVNVHEVRHEYEKQ 753

Query: 485  VTYSAIGGLQEQIRQLREVIE 547
                A   L E++  LR+V E
Sbjct: 754  SHVRA--ALAEELAVLRQVDE 772


>At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1179

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 170 RLKEGRDQLKDLTKQYDKSENDLKAL-QSVGQIVGEVLKQLTEE 298
           +L + +  LKD+ K+   + +++    +S+ QIVGEV+K L+ +
Sbjct: 140 KLDKWKQALKDVPKKLGFTLSEMSDEGESINQIVGEVIKVLSSD 183


>At2g45550.1 68415.m05664 cytochrome P450 family protein 
          Length = 511

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 264 ICPTLCRAFRSFSLLSYCLVKSFSWSRPS 178
           ICP L  A ++ SL+   L+ SF W  P+
Sbjct: 449 ICPGLPLAVKTVSLMLASLLYSFDWKLPN 477


>At2g28650.1 68415.m03483 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit
          Length = 573

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 68  LFTMPASTSDMEPLREKAFQDYRKKLMEH 154
           LFT+  ++S    L++ + Q + + LMEH
Sbjct: 3   LFTLSTTSSSSSKLKQHSHQSFSESLMEH 31


>At2g16890.2 68415.m01944 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 478

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
 Frame = +2

Query: 65  KLFTMPASTSDMEPLREKAFQ-------DYRKKLMEHKEVESRLKEGRDQLKDLTKQYDK 223
           +LFT P S SD EP+    F        D+     E +E  + L+   DQ+K  T  +  
Sbjct: 163 ELFTEPESKSDTEPVTVPDFPWIKVKKCDFDHGTTEPEESGAALELSMDQIKSTTTSHGF 222

Query: 224 SENDLKALQS 253
             N    L+S
Sbjct: 223 LVNSFYELES 232


>At2g16890.1 68415.m01943 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 312

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
 Frame = +2

Query: 65  KLFTMPASTSDMEPLREKAFQ-------DYRKKLMEHKEVESRLKEGRDQLKDLTKQYDK 223
           +LFT P S SD EP+    F        D+     E +E  + L+   DQ+K  T  +  
Sbjct: 163 ELFTEPESKSDTEPVTVPDFPWIKVKKCDFDHGTTEPEESGAALELSMDQIKSTTTSHGF 222

Query: 224 SENDLKALQS 253
             N    L+S
Sbjct: 223 LVNSFYELES 232


>At1g66120.1 68414.m07504 acyl-activating enzyme 11 (AAE11) similar
           to AMP-binding protein GI:1903034 from [Brassica napus];
           contains Pfam AMP-binding domain PF00501; identical to
           cDNA acyl-activating enzyme 11 (At1g66120) GI:29893230,
           acyl-activating enzyme 11 [Arabidopsis thaliana]
           GI:29893231
          Length = 572

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
 Frame = +2

Query: 122 FQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSV---GQIVGEVL 280
           +QD   KL EH+++E + ++G   +++LT   D    + K L+SV   G+ +GE++
Sbjct: 345 WQDEWNKLPEHQQIELQQRQG---VRNLTLA-DVDVKNTKTLESVPRDGKTMGEIV 396


>At1g62740.1 68414.m07081 stress-inducible protein, putative similar
           to sti (stress inducible protein) [Glycine max]
           GI:872116; contains Pfam profile PF00515 TPR Domain
          Length = 571

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 113 EKAFQDYRKKLMEHKEVES--RLKEGRDQLKDLTKQ--YDKSEND 235
           E   Q Y+K L EH+  E+  RL E     K+L +Q  YD +  D
Sbjct: 339 EPVIQTYQKALTEHRNPETLKRLNEAERAKKELEQQEYYDPNIGD 383


>At1g56660.1 68414.m06516 expressed protein
          Length = 522

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +2

Query: 116 KAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTE 295
           K  +D  +K  + K+V+    + +++ KD   +  K  ND+  L++    + E +  L E
Sbjct: 447 KMTEDEEEKKDDSKDVKIEGSKAKEEKKDKDVKKKKGGNDIGKLKTKLAKIDEKIGALME 506

Query: 296 EK 301
           EK
Sbjct: 507 EK 508


>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family ('A'TPases
           'A'ssociated with diverse cellular 'A'ctivities)
          Length = 941

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +2

Query: 482 DVTYSAIGGLQEQIRQLREVIELPLMNPELF 574
           +V +  +GGL++    + + ++LPL++ +LF
Sbjct: 654 NVKWDDVGGLEDVKTSILDTVQLPLLHKDLF 684


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,597,406
Number of Sequences: 28952
Number of extensions: 226472
Number of successful extensions: 829
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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