Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0978
         (612 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    33   0.003
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   0.88 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   4.7  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   4.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.2  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 32.7 bits (71), Expect = 0.003
 Identities = 25/87 (28%), Positives = 36/87 (41%)
 Frame = +1

Query: 145 LNLDNCRSTNIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFL 324
           LNLDN   + +  L+        L+ N++    L+    +  LR L L  N +S      
Sbjct: 450 LNLDNVSLSQVPALSTPNLLSLSLAFNSLPTVALEVAGNISSLRYLNLDYNDLSAVPIVT 509

Query: 325 SGCKKLAHLNLSGNKIKDLETLKPLEA 405
               +L HL+L GN I  L     L A
Sbjct: 510 HSLTELRHLSLEGNPITTLSNTSLLGA 536



 Score = 30.3 bits (65), Expect = 0.013
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 217 SLNNVGLTTLKGFPTLPMLRKLELSDNRISN--GLTFLSGCKKLAHLNLSGNKI 372
           S N+V       F  L  L ++ L DNRI +     F++  K L  LNL GNKI
Sbjct: 100 SFNSVRNVQQHTFADLIQLEQIHLDDNRIESLERRAFMN-LKSLKRLNLKGNKI 152



 Score = 25.8 bits (54), Expect = 0.29
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = +1

Query: 70  IGIFMNMEKRIILERRGRDPSQVKELNLDNCRSTNIVGLTDEYTNLQILSLNNVGLTTLK 249
           + +  N    + LE  G + S ++ LNLD    + +  +T   T L+ LSL    +TTL 
Sbjct: 471 LSLAFNSLPTVALEVAG-NISSLRYLNLDYNDLSAVPIVTHSLTELRHLSLEGNPITTLS 529

Query: 250 GFPTLPMLRKLE 285
               L    +LE
Sbjct: 530 NTSLLGAANQLE 541


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 380 KSLILFPERFKCASFLQPLR 321
           ++ I+FP  F CA  L PL+
Sbjct: 303 RAFIIFPTHFYCAFSLYPLK 322



 Score = 21.4 bits (43), Expect = 6.2
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -3

Query: 316 SVHLIFYCLTV 284
           ++HL+FYC+ +
Sbjct: 223 TIHLLFYCVLI 233



 Score = 20.6 bits (41), Expect(2) = 1.8
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -3

Query: 316 SVHLIFYC 293
           +VHL+FYC
Sbjct: 80  TVHLLFYC 87



 Score = 20.6 bits (41), Expect(2) = 1.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 211 FVNLYIHLLNQLCSYFCSYP 152
           F+   +HLL  LC Y+   P
Sbjct: 120 FIIFTVHLLFLLCIYYFVVP 139


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +1

Query: 172 NIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNGL 315
           N+ G+      L IL  +  G TTL    T      L +S  R  NG+
Sbjct: 96  NVFGVAYPGELLAILGSSGAGKTTLLNTLTFHTSSNLTVSGLRCVNGI 143


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +1

Query: 172 NIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNGL 315
           N+ G+      L IL  +  G TTL    T      L +S  R  NG+
Sbjct: 96  NVFGVAYPGELLAILGSSGAGKTTLLNTLTFHTSSNLTVSGLRCVNGI 143


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = +1

Query: 271  LRKLELSDNR---ISNGLTFLSGCKKLAHLNLSGN 366
            L K++  D R   +SN  TF+ G K     N+  N
Sbjct: 1119 LEKMQYPDLRSPAVSNVTTFMEGSKATVKNNVEDN 1153


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = +1

Query: 271  LRKLELSDNR---ISNGLTFLSGCKKLAHLNLSGN 366
            L K++  D R   +SN  TF+ G K     N+  N
Sbjct: 1119 LEKMQYPDLRSPAVSNVTTFMEGSKATVKNNVEDN 1153


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,808
Number of Sequences: 336
Number of extensions: 2353
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)