BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0978 (612 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 29 0.40 SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 29 0.40 SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 29 0.53 SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 29 0.70 SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C... 28 1.2 SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 27 1.6 SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom... 27 2.8 SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 27 2.8 SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 26 3.7 SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.9 SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 26 4.9 SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 25 8.6 SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 25 8.6 SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 25 8.6 SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.6 SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 25 8.6 >SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22 |Schizosaccharomyces pombe|chr 1|||Manual Length = 332 Score = 29.5 bits (63), Expect = 0.40 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 6/130 (4%) Frame = +1 Query: 31 NNL--LANLKLFKVLIGIFMNMEK-RIILERRGRDPSQVKELNLDNCRSTNIVGLTDEYT 201 NN+ + N+ K L +F + R I G D EL + R ++ D Sbjct: 114 NNIKTIRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNLELGGNKIR---VIENLDTLV 170 Query: 202 NLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRIS--NGLTFLSGCKKLAHLNLSG-NKI 372 NL+ L + +T + F L L L + NRI+ L LS C + +++ +G Sbjct: 171 NLEKLWVGKNKITKFENFEKLQKLSLLSIQSNRITQFENLACLSHCLRELYVSHNGLTSF 230 Query: 373 KDLETLKPLE 402 +E L+ LE Sbjct: 231 SGIEVLENLE 240 >SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 609 Score = 29.5 bits (63), Expect = 0.40 Identities = 16/54 (29%), Positives = 26/54 (48%) Frame = +1 Query: 151 LDNCRSTNIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNG 312 LD CR+ + ++ Y +LQIL+ VG + T P +D I++G Sbjct: 518 LDPCRAMDPKVVSTSYVSLQILNKPYVGFRNINANYTFPTTSYSRRNDEEITSG 571 >SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizosaccharomyces pombe|chr 3|||Manual Length = 1045 Score = 29.1 bits (62), Expect = 0.53 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = +1 Query: 202 NLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLS-GCKKLAHLNLSGNKIKD 378 +++ L L+N TL +R LEL++ ++ +++ L L+LS N I D Sbjct: 846 DIRNLYLSNNTFVTLDCKHMFLGVRYLELANVQLKEVPKYIATSMPNLRVLDLSHNYISD 905 Query: 379 LETLKPLE 402 +E+LKPL+ Sbjct: 906 IESLKPLQ 913 >SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe|chr 1|||Manual Length = 886 Score = 28.7 bits (61), Expect = 0.70 Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 4/106 (3%) Frame = -2 Query: 365 FPERFKCASFLQPLRKVSPFDILLSDSSNFLSIGSVGKPLSVVRPTLLRLSICKFVYSSV 186 F FK S L P + LS S++++ V P S+++ TL + KF S Sbjct: 723 FGSLFKNVSGL-PAETEIAYHHTLSASNSYVFTDLVDNPDSMLKSTLKYRFVFKF--SPS 779 Query: 185 KPTMFVLLQLSRFSSF---TCEGSLPLRSKMILF-SMFINIPINTL 60 +P + ++ + + G LP++SKM+L+ S I+ P++++ Sbjct: 780 QPLSSLGKNKEKYDALLERSSHGVLPVQSKMLLYNSNHISCPLSSI 825 >SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 334 Score = 27.9 bits (59), Expect = 1.2 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = -2 Query: 170 VLLQLSRFSSFTCEGSLPLRSKMILFSMFINIPINTLNNF 51 +LLQ ++++ C G+ L S + + + IP TL +F Sbjct: 113 ILLQYCMYAAYHCLGNNDLDSAKVWYFSILYIPTTTLTSF 152 >SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pombe|chr 3|||Manual Length = 534 Score = 27.5 bits (58), Expect = 1.6 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = +2 Query: 233 VSQHSKVFRRCLCSENWNCQTIEYQMD 313 + QH L + NW+CQ I+ MD Sbjct: 458 LQQHKNTIENQLAAANWDCQKIDEFMD 484 >SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 184 Score = 26.6 bits (56), Expect = 2.8 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = -2 Query: 236 RPTLLRLSICKFVYSSVKPTMFVLL 162 RP + RL KF YSS++ T+F L+ Sbjct: 107 RPFIRRLPEFKFWYSSMRATLFALV 131 >SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase Its3|Schizosaccharomyces pombe|chr 1|||Manual Length = 742 Score = 26.6 bits (56), Expect = 2.8 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -2 Query: 248 LSVVRPTLLRLSICKFVYSSVKPTMFVL 165 +S V P KFV SS+KPT+ VL Sbjct: 642 ISAVPPAEYASRFYKFVESSIKPTLLVL 669 >SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 898 Score = 26.2 bits (55), Expect = 3.7 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = -2 Query: 302 ILLSDSSNFLSIGSVGKPLSVVRPTLLRLSICKFVYSSVKPTMFVLLQLSR-FSSFTCEG 126 ILL+ S ++ GS + + ++ LL L C F++ ++KP +++L +R E Sbjct: 206 ILLALSVTLVNSGSGVRAVYIL---LLALGWCLFLFIAIKPLVYLLAVKTRSLKDKPSES 262 Query: 125 SLPLRSKMILFSMF 84 + + M+L S F Sbjct: 263 FICIVLSMVLVSAF 276 >SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1379 Score = 25.8 bits (54), Expect = 4.9 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Frame = +1 Query: 166 STNIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLSGCKKLA 345 S N +G TD Y +L L K F R+ LSD++ + + L KKL+ Sbjct: 811 SENDIGGTDIYP----FALQGAALAAAKDFSR----REASLSDSQSAASMDMLPMKKKLS 862 Query: 346 HLNLSGNK-IKDLET 387 H + S + IK L T Sbjct: 863 HSSASSTRSIKSLLT 877 >SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccharomyces pombe|chr 1|||Manual Length = 621 Score = 25.8 bits (54), Expect = 4.9 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = +1 Query: 253 FPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKDLET 387 F +L L L+LS N ++ L +L LNL+ NKI T Sbjct: 352 FLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKITGCRT 396 >SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1040 Score = 25.0 bits (52), Expect = 8.6 Identities = 15/41 (36%), Positives = 18/41 (43%) Frame = -2 Query: 140 FTCEGSLPLRSKMILFSMFINIPINTLNNFRFANKLFLKEL 18 F CE L K+ S F N PI N+F LF E+ Sbjct: 907 FICESVYHLHDKV---SKFQNFPITNTNSFLEPKMLFATEI 944 >SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces pombe|chr 3|||Manual Length = 563 Score = 25.0 bits (52), Expect = 8.6 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = +1 Query: 220 LNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSG 363 LN +G G TL + +L+D + G+ C +L HLNLSG Sbjct: 394 LNQIG----SGLHTLSLSGCTKLTDEVLKQGIG--PCCGRLKHLNLSG 435 >SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosaccharomyces pombe|chr 2|||Manual Length = 506 Score = 25.0 bits (52), Expect = 8.6 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 7/101 (6%) Frame = -2 Query: 431 KSRFFRFLKASRGFRVSKSLILFPERFKCASFLQP--LRKVSPFDILLSDS--SNF-LSI 267 K RF RF+ S + SLILFP + L P L +V PF L + +NF ++ Sbjct: 242 KIRFSRFILLSVTVVFTFSLILFPWIYMDYKTLLPQILHRVFPFARGLWEDKVANFWCTL 301 Query: 266 GSVGKPLSVVRPTLLRLSICKFVYS--SVKPTMFVLLQLSR 150 +V K V TL +L + +++ S+ P+ +L R Sbjct: 302 NTVFKIREVF--TLHQLQVISLIFTLISILPSCVILFLYPR 340 >SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 600 Score = 25.0 bits (52), Expect = 8.6 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Frame = -2 Query: 230 TLLRLSICKFVYSSVKPTMFVLLQLSRFSSFTCEGSLP-LRSKMILFSMFINIPINTLNN 54 T + SI FVY + F+ S + L S ++LFS+F+ IP + N Sbjct: 67 TFFKKSIFFFVYYCKQALEFISTVFSIIKFLLNRRKVSFLLSFLLLFSLFLLIPNDGRVN 126 Query: 53 FRFANKLFLKEL 18 +F K F+ + Sbjct: 127 IKFFYKDFVDRI 138 >SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces pombe|chr 2|||Manual Length = 658 Score = 25.0 bits (52), Expect = 8.6 Identities = 7/13 (53%), Positives = 9/13 (69%) Frame = +2 Query: 89 WKRGSSWNAEGGI 127 WKR +WN E G+ Sbjct: 124 WKRNKAWNTENGL 136 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,073,396 Number of Sequences: 5004 Number of extensions: 39329 Number of successful extensions: 139 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 135 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 139 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 267622334 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -