Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0978
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 29 0.40
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 29 0.40
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 29 0.53
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 29 0.70
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C... 28 1.2
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 27 1.6
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom... 27 2.8
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 27 2.8
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 26 3.7
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.9
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 26 4.9
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 25 8.6
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 25 8.6
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 25 8.6
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.6
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 25 8.6
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 29.5 bits (63), Expect = 0.40
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 6/130 (4%)
Frame = +1
Query: 31 NNL--LANLKLFKVLIGIFMNMEK-RIILERRGRDPSQVKELNLDNCRSTNIVGLTDEYT 201
NN+ + N+ K L +F + R I G D EL + R ++ D
Sbjct: 114 NNIKTIRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNLELGGNKIR---VIENLDTLV 170
Query: 202 NLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRIS--NGLTFLSGCKKLAHLNLSG-NKI 372
NL+ L + +T + F L L L + NRI+ L LS C + +++ +G
Sbjct: 171 NLEKLWVGKNKITKFENFEKLQKLSLLSIQSNRITQFENLACLSHCLRELYVSHNGLTSF 230
Query: 373 KDLETLKPLE 402
+E L+ LE
Sbjct: 231 SGIEVLENLE 240
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 29.5 bits (63), Expect = 0.40
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 151 LDNCRSTNIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNG 312
LD CR+ + ++ Y +LQIL+ VG + T P +D I++G
Sbjct: 518 LDPCRAMDPKVVSTSYVSLQILNKPYVGFRNINANYTFPTTSYSRRNDEEITSG 571
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 29.1 bits (62), Expect = 0.53
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +1
Query: 202 NLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLS-GCKKLAHLNLSGNKIKD 378
+++ L L+N TL +R LEL++ ++ +++ L L+LS N I D
Sbjct: 846 DIRNLYLSNNTFVTLDCKHMFLGVRYLELANVQLKEVPKYIATSMPNLRVLDLSHNYISD 905
Query: 379 LETLKPLE 402
+E+LKPL+
Sbjct: 906 IESLKPLQ 913
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 886
Score = 28.7 bits (61), Expect = 0.70
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Frame = -2
Query: 365 FPERFKCASFLQPLRKVSPFDILLSDSSNFLSIGSVGKPLSVVRPTLLRLSICKFVYSSV 186
F FK S L P + LS S++++ V P S+++ TL + KF S
Sbjct: 723 FGSLFKNVSGL-PAETEIAYHHTLSASNSYVFTDLVDNPDSMLKSTLKYRFVFKF--SPS 779
Query: 185 KPTMFVLLQLSRFSSF---TCEGSLPLRSKMILF-SMFINIPINTL 60
+P + ++ + + G LP++SKM+L+ S I+ P++++
Sbjct: 780 QPLSSLGKNKEKYDALLERSSHGVLPVQSKMLLYNSNHISCPLSSI 825
>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 334
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 170 VLLQLSRFSSFTCEGSLPLRSKMILFSMFINIPINTLNNF 51
+LLQ ++++ C G+ L S + + + IP TL +F
Sbjct: 113 ILLQYCMYAAYHCLGNNDLDSAKVWYFSILYIPTTTLTSF 152
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 233 VSQHSKVFRRCLCSENWNCQTIEYQMD 313
+ QH L + NW+CQ I+ MD
Sbjct: 458 LQQHKNTIENQLAAANWDCQKIDEFMD 484
>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 184
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 236 RPTLLRLSICKFVYSSVKPTMFVLL 162
RP + RL KF YSS++ T+F L+
Sbjct: 107 RPFIRRLPEFKFWYSSMRATLFALV 131
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 248 LSVVRPTLLRLSICKFVYSSVKPTMFVL 165
+S V P KFV SS+KPT+ VL
Sbjct: 642 ISAVPPAEYASRFYKFVESSIKPTLLVL 669
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 26.2 bits (55), Expect = 3.7
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = -2
Query: 302 ILLSDSSNFLSIGSVGKPLSVVRPTLLRLSICKFVYSSVKPTMFVLLQLSR-FSSFTCEG 126
ILL+ S ++ GS + + ++ LL L C F++ ++KP +++L +R E
Sbjct: 206 ILLALSVTLVNSGSGVRAVYIL---LLALGWCLFLFIAIKPLVYLLAVKTRSLKDKPSES 262
Query: 125 SLPLRSKMILFSMF 84
+ + M+L S F
Sbjct: 263 FICIVLSMVLVSAF 276
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 25.8 bits (54), Expect = 4.9
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 166 STNIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLSGCKKLA 345
S N +G TD Y +L L K F R+ LSD++ + + L KKL+
Sbjct: 811 SENDIGGTDIYP----FALQGAALAAAKDFSR----REASLSDSQSAASMDMLPMKKKLS 862
Query: 346 HLNLSGNK-IKDLET 387
H + S + IK L T
Sbjct: 863 HSSASSTRSIKSLLT 877
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 253 FPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKDLET 387
F +L L L+LS N ++ L +L LNL+ NKI T
Sbjct: 352 FLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKITGCRT 396
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -2
Query: 140 FTCEGSLPLRSKMILFSMFINIPINTLNNFRFANKLFLKEL 18
F CE L K+ S F N PI N+F LF E+
Sbjct: 907 FICESVYHLHDKV---SKFQNFPITNTNSFLEPKMLFATEI 944
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 25.0 bits (52), Expect = 8.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 220 LNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSG 363
LN +G G TL + +L+D + G+ C +L HLNLSG
Sbjct: 394 LNQIG----SGLHTLSLSGCTKLTDEVLKQGIG--PCCGRLKHLNLSG 435
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 25.0 bits (52), Expect = 8.6
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Frame = -2
Query: 431 KSRFFRFLKASRGFRVSKSLILFPERFKCASFLQP--LRKVSPFDILLSDS--SNF-LSI 267
K RF RF+ S + SLILFP + L P L +V PF L + +NF ++
Sbjct: 242 KIRFSRFILLSVTVVFTFSLILFPWIYMDYKTLLPQILHRVFPFARGLWEDKVANFWCTL 301
Query: 266 GSVGKPLSVVRPTLLRLSICKFVYS--SVKPTMFVLLQLSR 150
+V K V TL +L + +++ S+ P+ +L R
Sbjct: 302 NTVFKIREVF--TLHQLQVISLIFTLISILPSCVILFLYPR 340
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 8.6
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = -2
Query: 230 TLLRLSICKFVYSSVKPTMFVLLQLSRFSSFTCEGSLP-LRSKMILFSMFINIPINTLNN 54
T + SI FVY + F+ S + L S ++LFS+F+ IP + N
Sbjct: 67 TFFKKSIFFFVYYCKQALEFISTVFSIIKFLLNRRKVSFLLSFLLLFSLFLLIPNDGRVN 126
Query: 53 FRFANKLFLKEL 18
+F K F+ +
Sbjct: 127 IKFFYKDFVDRI 138
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 8.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +2
Query: 89 WKRGSSWNAEGGI 127
WKR +WN E G+
Sbjct: 124 WKRNKAWNTENGL 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,073,396
Number of Sequences: 5004
Number of extensions: 39329
Number of successful extensions: 139
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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