Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0978
(612 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30526| Best HMM Match : LRR_1 (HMM E-Value=8e-08) 171 4e-43
SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07) 47 1e-05
SB_4797| Best HMM Match : LRR_1 (HMM E-Value=6.7e-13) 42 5e-04
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14) 38 0.005
SB_19618| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20) 37 0.011
SB_53824| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12) 36 0.020
SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08) 36 0.020
SB_47473| Best HMM Match : LRR_1 (HMM E-Value=2.8e-10) 36 0.026
SB_1946| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.034
SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21) 34 0.079
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_51703| Best HMM Match : LRR_1 (HMM E-Value=1.9e-06) 33 0.18
SB_47414| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_38600| Best HMM Match : Ank (HMM E-Value=6.9e-36) 33 0.24
SB_19622| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13) 31 0.56
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0) 30 1.7
SB_21653| Best HMM Match : LRR_1 (HMM E-Value=0.00021) 30 1.7
SB_24987| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_22441| Best HMM Match : LRR_1 (HMM E-Value=1.8e-19) 30 1.7
SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_52308| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_46153| Best HMM Match : LRR_1 (HMM E-Value=0.0017) 29 2.2
SB_40605| Best HMM Match : Prion_octapep (HMM E-Value=9.3) 29 2.2
SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06) 29 2.2
SB_20569| Best HMM Match : LRR_1 (HMM E-Value=1.1e-27) 29 2.2
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_5807| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_15974| Best HMM Match : LRR_1 (HMM E-Value=7.1e-15) 27 9.1
SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12) 27 9.1
>SB_30526| Best HMM Match : LRR_1 (HMM E-Value=8e-08)
Length = 219
Score = 171 bits (416), Expect = 4e-43
Identities = 87/138 (63%), Positives = 103/138 (74%), Gaps = 2/138 (1%)
Frame = +1
Query: 115 RGRDPSQ--VKELNLDNCRSTNIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLEL 288
RG P+ + EL LDNCRST+IVGLTDE+ L+ILS+ NVGLTTLK FP LP LRKLEL
Sbjct: 8 RGSKPAARPITELILDNCRSTSIVGLTDEFVKLEILSMINVGLTTLKNFPKLPNLRKLEL 67
Query: 289 SDNRISNGLTFLSGCKKLAHLNLSGNKIKDLETLKPLEAXXXXXXXXXXXXXVTSIEDYK 468
SDNRIS+GL L+G KL HL+LSGNKIKDLETL+PLE VT+++DYK
Sbjct: 68 SDNRISSGLQNLTGSPKLTHLSLSGNKIKDLETLEPLEKLSNLKSLDLFNCEVTNVDDYK 127
Query: 469 SKVFAMHPSLKYLDGFDK 522
+KVF + PSL+YLDG DK
Sbjct: 128 NKVFELIPSLRYLDGCDK 145
>SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07)
Length = 534
Score = 46.8 bits (106), Expect = 1e-05
Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Frame = +1
Query: 190 DEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNG--LTFLSGCKKLAHLNLSG 363
+E L L+++N + +++ LP+L L+++ NR+++ + L+ C+KL+ ++LS
Sbjct: 53 EELDGLDTLNVSNNIIRSIENIACLPVLNTLQIAHNRLASAGDIKELASCQKLSIVDLSY 112
Query: 364 NKIKDLETLKPL-EAXXXXXXXXXXXXXVTSIEDYKSKVFAMHPSLKYLD 510
NKI D + L E + I++Y+ + +LKYLD
Sbjct: 113 NKIDDPNIVDVLAEMPNLSVLNLIGNPVIKKIKNYRKNMILKLKNLKYLD 162
>SB_4797| Best HMM Match : LRR_1 (HMM E-Value=6.7e-13)
Length = 335
Score = 41.5 bits (93), Expect = 5e-04
Identities = 35/122 (28%), Positives = 49/122 (40%)
Frame = +1
Query: 145 LNLDNCRSTNIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFL 324
L LDN I GL D NLQ L L+ + ++G L L+ L L +NRI+ + +
Sbjct: 70 LQLDNNIIEKIEGL-DMLVNLQWLDLSFNNIEVIEGLDKLTKLKDLTLYNNRITK-IENM 127
Query: 325 SGCKKLAHLNLSGNKIKDLETLKPLEAXXXXXXXXXXXXXVTSIEDYKSKVFAMHPSLKY 504
L ++ N +K L+ + L YK V A P L Y
Sbjct: 128 DSLTNLHVFSIGNNSLKQLDNVIYLRRFKNLRTLNLSFNPFCEDSKYKEYVIAHLPDLVY 187
Query: 505 LD 510
LD
Sbjct: 188 LD 189
>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
Length = 829
Score = 38.3 bits (85), Expect = 0.005
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +1
Query: 145 LNLDNCRSTNIVGLTDEYTNLQILSLNNVGLTTL-KGFPTLPMLRKLELSDNRIS--NGL 315
L+L+NC T+I + +L+ L LNN LT++ G L L L L +N IS
Sbjct: 527 LSLENCNLTSIPDVVFHLESLEKLDLNNNKLTSIPAGITNLTKLTNLNLENNNISVVPKY 586
Query: 316 TFLSGCKKLAHLNLSGN 366
+ GC K+ L+ + N
Sbjct: 587 VWQMGCLKVLFLSNNSN 603
>SB_19618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 37.5 bits (83), Expect = 0.008
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +1
Query: 103 ILERRGRDPSQVKELNLDNCRSTNIVGLTD-EYTNLQILSLNNVGLTTLKGFPTLPMLRK 279
I+E G DP ++ L + R ++ T NL+ L L + ++G L L K
Sbjct: 444 IVEVSGLDPGKLSRLAILELRGNKLMTTTGMNLENLRELYLAANTIRKVEGLDRLEHLTK 503
Query: 280 LELSDNRISNGLTFLSGCKKLAHLNL 357
L L DN+I + F K L +LNL
Sbjct: 504 LHLRDNQIDSLEGFSENMKNLQYLNL 529
>SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20)
Length = 681
Score = 37.1 bits (82), Expect = 0.011
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Frame = +1
Query: 22 SLRNNLLANLK-LFKVLIGIFMNMEKRIILERRGRDP-SQVKELNLDNCRSTNIVGLTDE 195
+ ++NL+ N++ L + IF+++ I E G ++ L L R I L +
Sbjct: 169 NFQHNLIRNIQHLANLRRLIFLDIYDNQIEEISGLSSLKSLRVLMLGKNRIRKINNL-EA 227
Query: 196 YTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKI 372
T L +L L+ ++ ++ L LR L L+ N I + +SG + LA LNL NKI
Sbjct: 228 LTKLDVLDLHGNRISKIENLSHLTELRVLNLAGNEILK-VCNISGMRSLAELNLRRNKI 285
>SB_53824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 740
Score = 36.7 bits (81), Expect = 0.015
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +1
Query: 160 CRSTNIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLSGC-K 336
C+ + I + + ++ + ++GFP L L+ + L++NR+ L C
Sbjct: 519 CKISVIENMGATLDQFDTIDFSDNDIRKIEGFPLLKRLKTILLNNNRVCRVAEGLGECLP 578
Query: 337 KLAHLNLSGNKIKDLETLKPLEA 405
L + L+ N +++L+ L+PLE+
Sbjct: 579 NLESIILTNNAMQELKDLEPLES 601
>SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12)
Length = 481
Score = 36.3 bits (80), Expect = 0.020
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = +1
Query: 202 NLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKDL 381
NL +L L + ++ +K L L L +N+IS + L C++L+ L L GN I +
Sbjct: 52 NLSVLYLYDNNISKIKNLGFAGNLTHLYLQNNKISR-IEGLDHCRRLSKLYLGGNSITVI 110
Query: 382 ETLKPLE 402
E L LE
Sbjct: 111 EGLDKLE 117
>SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)
Length = 535
Score = 36.3 bits (80), Expect = 0.020
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Frame = +1
Query: 160 CRSTNIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPM-----LRKLELSDNRISN-GLTF 321
CR TN+ L + N + ++ LK P ++ L L+DN + G
Sbjct: 10 CRLTNLTELRKHFDNTDRIHSLDLSSNQLKIIPEFVFRGFSNVKNLTLADNDLEEIGNAS 69
Query: 322 LSGCKKLAHLNLSGNKIK 375
LSG K L +LNL+ NK++
Sbjct: 70 LSGLKSLLYLNLANNKLR 87
>SB_47473| Best HMM Match : LRR_1 (HMM E-Value=2.8e-10)
Length = 658
Score = 35.9 bits (79), Expect = 0.026
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +1
Query: 166 STNIVGLTDEYTNLQILSL--NNVGLTTLKGFPTLPMLRKLELSDNRISN-GLTFLSGCK 336
ST G+ +T L+ LSL NN+ +GF L L L +SDNRIS + + +
Sbjct: 81 STITGGVFAGFTALRNLSLTFNNIHTIRARGFAGLNKLEYLNMSDNRISTWEIDRDTELR 140
Query: 337 KLAHLNLSGNKIKDLETLKP 396
L L++SGNK TL P
Sbjct: 141 SLVVLDISGNKALS-NTLPP 159
>SB_1946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +1
Query: 256 PTLPMLRKLELSDNRISNGLTFLS---GCKKLAHLNLSGNKIKD 378
P+L +L ++LS N +SN S G K + H+NLS NK+ D
Sbjct: 467 PSLKLLEHIDLSRNNLSNWTRMTSTFDGLKSIKHINLSANKMCD 510
>SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)
Length = 609
Score = 34.3 bits (75), Expect = 0.079
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = +1
Query: 205 LQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISN--GLTFLSGCKKLAHLNLSGNKIKD 378
LQ L+L + + ++KG PML++++L +N+I + + ++ K L +LNL N I+
Sbjct: 193 LQKLNLASNCIRSMKGLQGHPMLQEVDLQENQIIDIAEVRYIRELKLLRNLNLQSNPIQS 252
Query: 379 L 381
L
Sbjct: 253 L 253
>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 33.9 bits (74), Expect = 0.10
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Frame = +1
Query: 127 PSQVKELNLDNCRSTNIVGLTDE----YTNLQILSLNNVGLTTL--KGFPTLPMLRKLEL 288
PS + LNL NIV L + +T L+ L L+ T++ F L L L+L
Sbjct: 60 PSDITALNLGY---NNIVDLDPKQLLKFTALKELDLSRNFFTSILASAFNRLSSLEVLKL 116
Query: 289 SDNRISNGLTFLSGCKKLAHLNLSGNKIKDLE 384
S NRIS G KL LNL N++ ++
Sbjct: 117 SKNRISTIRGAFWGQNKLQQLNLERNRLSHIQ 148
>SB_51703| Best HMM Match : LRR_1 (HMM E-Value=1.9e-06)
Length = 632
Score = 33.1 bits (72), Expect = 0.18
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 130 SQVKELNLDNCRSTNIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPM-LRKLELSDNRIS 306
S K L + + + T I + NLQ L+L+ L +L LP L++LELS N+IS
Sbjct: 112 SHFKSLRIVDKKVTEIDEGLLNFKNLQQLTLS-ANLISLVDSQRLPKCLKELELSANKIS 170
Query: 307 NGLTFLSGCKKLAHLNLSGNKIKDL 381
+ + L HL L N+I +
Sbjct: 171 DISSLCRNPPPLIHLGLGYNQITSI 195
>SB_47414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 32.7 bits (71), Expect = 0.24
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +1
Query: 208 QILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKD 378
+I + NN+ L +L+ L+LS+N++ L+ C KL LNL N IKD
Sbjct: 159 EIYAANNLIQALGNEVGCLHVLKVLDLSENKLEAIPCELADCLKLKDLNLKENPIKD 215
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +1
Query: 202 NLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKDL 381
+LQ L+LN LTT+ L +L++S NR+ + + + +A + + N I+ L
Sbjct: 111 HLQTLNLNCNALTTVPPLRNAKNLARLDISHNRLESLPEGIFNLELIAEIYAANNLIQAL 170
>SB_38600| Best HMM Match : Ank (HMM E-Value=6.9e-36)
Length = 852
Score = 32.7 bits (71), Expect = 0.24
Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 3/43 (6%)
Frame = +1
Query: 271 LRKLELSDNRISN---GLTFLSGCKKLAHLNLSGNKIKDLETL 390
L+KL+LS+NRI++ G+ L+ L LNLSGN I +++TL
Sbjct: 623 LQKLDLSNNRITSVPVGMPCLA--TSLQTLNLSGNNISEVKTL 663
>SB_19622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 31.9 bits (69), Expect = 0.42
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +1
Query: 130 SQVKELNLDNCRSTNIVGLTDEYTN--LQILSLNNVGLTTLK-GFPTLPMLRKLELSDNR 300
+++ L L+NC T + N L+ LSL N L ++ L+KL+LS NR
Sbjct: 437 TELDSLLLENCILTEEDFKRKNWANFHLRSLSLINCNLESIPDAILKQSSLKKLDLSRNR 496
Query: 301 ISNGLTFLSGCKKLAHLNLSGNKI 372
I + + L LNL+ NKI
Sbjct: 497 IKSIPAQIEELSNLETLNLASNKI 520
>SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)
Length = 1383
Score = 31.5 bits (68), Expect = 0.56
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +1
Query: 145 LNLDNCRSTNIVGLTDEYTNLQILSLNNVGLTTL-KGFPTLPMLRKLELSDNRISNGLTF 321
L L NC ++ E TNL LSL + + L K L L+KL L+DN++
Sbjct: 414 LTLTNCDIMDVPLSIYELTNLNSLSLVSCNIGVLRKEISDLKQLQKLRLTDNKLRRLPDT 473
Query: 322 LSGCKKLAHLNLSGNKIKDL 381
+ L L+ N ++ L
Sbjct: 474 IGRLHNLRFLHCDYNVLESL 493
>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3259
Score = 31.1 bits (67), Expect = 0.74
Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 13/170 (7%)
Frame = +1
Query: 40 LANLKLFKVLIGIFMNMEKRI-ILERRGRDPSQVKELNLDNCRSTNIVGLTDEYTNLQIL 216
LA ++ + + + MN+ R L G + +L L N + + L TNL++L
Sbjct: 702 LAGVRNLEDITQLEMNVNTRENSLGNFGSMLPNLNKLKLSNSIISTVRDLGTCLTNLRML 761
Query: 217 SLNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKDLETLKP 396
+ L+ L G +L L +L L+ N IS+ ++ +S L L+L GN + ++ ++
Sbjct: 762 WMCRCSLSDLDGISSLSSLAELYLAFNDISD-VSPVSMLDNLQVLDLEGNLVDEIAQVEF 820
Query: 397 LEAXXXXXXXXXXXXXVTSIE------------DYKSKVFAMHPSLKYLD 510
L V + DY+ V PSL++LD
Sbjct: 821 LTLCSSLKCLNLEGNPVCTAPHPDASEEELASYDYRKAVHQAVPSLRFLD 870
>SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0)
Length = 680
Score = 29.9 bits (64), Expect = 1.7
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 6/125 (4%)
Frame = +1
Query: 25 LRNNLLANLKLFKVLIGIFMNME-KRIILERRGRDPSQVKELNLDNCRSTNIVGLTDEY- 198
L NLL +L +G + LE ++ +L + N + L D++
Sbjct: 70 LTGNLLTSLPDVFARLGNLTELHLNENSLEELPESLGKLSKLRVLNLTGNKLEKLRDDFG 129
Query: 199 ---TNLQILSLNNVGLTTLK-GFPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGN 366
+L L ++ L+ L F + L+ LEL DN I +KL +NLS N
Sbjct: 130 AGLASLTELRIDENDLSELSVSFTLMKNLKVLELGDNHIERLPEDFGNLRKLEVVNLSQN 189
Query: 367 KIKDL 381
I+ L
Sbjct: 190 NIEKL 194
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 199 TNLQILSLNNVGLTTLKG-FPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIK 375
T+L L L++ L++L F L ++ L+L N++S L + L L+L GNK+K
Sbjct: 403 TSLVELRLDSNQLSSLPASFANLTNVKTLDLYRNKLSEIPRVLLKLENLMRLDLDGNKLK 462
Score = 28.7 bits (61), Expect = 3.9
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Frame = +1
Query: 205 LQILSLNNVGLTTLKG-FPTLPMLRKLELSDNRISNGLT-----FLSGCKKLAHLNLSGN 366
L+ L +N +T L F LP + L LSDN +S+ +SG K L+ L+LSGN
Sbjct: 227 LEHLYADNNNITWLPDWFGDLPNIINLCLSDNELSDSALPDHFGSISG-KTLSSLDLSGN 285
Query: 367 KIKDL 381
+I L
Sbjct: 286 RITKL 290
>SB_21653| Best HMM Match : LRR_1 (HMM E-Value=0.00021)
Length = 198
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +1
Query: 190 DEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNG--LTFLSGCKKL 342
+E L L+++N + +++ LP+L L+++ NR+++ + L+ C+KL
Sbjct: 145 EELDGLDTLNVSNNIIRSIENIACLPVLNTLQIAHNRLASAGDIKELASCQKL 197
>SB_24987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 54 VVQSVNWYIYEHGKEDHLGTQREGSFTGERT 146
++ V++Y Y H +D LG EG T ERT
Sbjct: 25 LILGVSFYRYYHNSKDLLGKFNEGILTNERT 55
>SB_22441| Best HMM Match : LRR_1 (HMM E-Value=1.8e-19)
Length = 261
Score = 29.9 bits (64), Expect = 1.7
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 181 GLTDEYTNLQILSLNNVGLTTL-KG-FPTLPMLRKLELSDNRIS-NGLTFLSGCKKLAHL 351
G + +LQ L L+ +T L KG F +L ML LEL+DN I + G L L
Sbjct: 126 GTLEGLRDLQRLRLSKNTITRLYKGAFESLHMLTVLELADNEIEFIDVGAFGGLFSLRTL 185
Query: 352 NLSGNKIK 375
L GN IK
Sbjct: 186 FLGGNLIK 193
>SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1152
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 121 RDPSQVKELNLDNCRSTNI-VGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDN 297
R+P ++K LNL + T + G+ + L+ LSL N +T LKG + L++++N
Sbjct: 1092 RNP-KLKWLNLSSNNLTILDTGMLERLPELRYLSLENNNITCLKGLQVNNNITSLDVNNN 1150
>SB_52308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1407
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 193 EYTNLQILSLNNVGLTTLKG-FPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNK 369
E NLQ L L + + L L L++L L+ N++++ + ++L LN+SGN
Sbjct: 67 ELVNLQELYLQHNSIELLPDELGNLVNLKRLGLAHNKLNDVPLYFGKFRQLEWLNISGNA 126
Query: 370 IK 375
I+
Sbjct: 127 IE 128
>SB_46153| Best HMM Match : LRR_1 (HMM E-Value=0.0017)
Length = 391
Score = 29.5 bits (63), Expect = 2.2
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Frame = +1
Query: 142 ELNLDNCRSTNIVGLTDEYTNLQILSLNNVGLTTLK----GFPTLPM---------LRKL 282
EL++ +CR L +N+Q LS ++ L G TLP+ L L
Sbjct: 127 ELDVSHCRLGKSHELLTHISNMQSLSRVSLKDNCLGDGDVGHMTLPVRLLGRGLCNLSTL 186
Query: 283 ELSDNRISNGLTF--LSGCKKLAHLNLSGNKIKDL 381
+LS N G +F LS KLA LNLS +KD+
Sbjct: 187 DLSQNPKITGHSFKYLSKLTKLASLNLSATGVKDV 221
>SB_40605| Best HMM Match : Prion_octapep (HMM E-Value=9.3)
Length = 586
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 206 KFVYSSVKPTMFVLLQLSRFSSFTCEGSL 120
+F +++ KPT V+L F+ F C+G L
Sbjct: 2 EFAHNATKPTRSVMLYTEFFNQFDCDGDL 30
>SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)
Length = 1020
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 148 NLDNCRSTNIVGLTDEYTNLQI-LSLNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFL 324
+LD+ T ++ L L+ LS N L +GFP +L+ L I + L
Sbjct: 820 HLDDLAITTVLILLPRLRYLRCPLSDENCKLMQYRGFPDAEVLQILRRYPITIDTLCSLL 879
Query: 325 SGCKKLAHLNLS 360
GC ++ HL++S
Sbjct: 880 IGCDQVRHLDVS 891
>SB_20569| Best HMM Match : LRR_1 (HMM E-Value=1.1e-27)
Length = 309
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Frame = +1
Query: 133 QVKELNLDNCRSTNIVGLTDEYTNLQILSLNNVGLTTLKGFPT----LPMLRKLELSDNR 300
Q++EL + N T ++ L + L++L + G + P L L+ L L +N
Sbjct: 138 QLEELWIIN---TQLMALPADICRLKLLKKLSAGKNMITSLPDKISGLVSLQWLSLRENH 194
Query: 301 ISNGLTFLSGCKKLAHLNLSGNKIKD 378
+S+ + KLAHL+L+ NK ++
Sbjct: 195 LSSLPSEFFKLPKLAHLDLNMNKFEE 220
>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1252
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 206 KFVYSSVKPTMFVLLQLSRFSSFTCEGSL 120
+F +++ KPT V+L F+ F C+G L
Sbjct: 60 EFAHNATKPTRSVMLYPEFFNQFDCDGDL 88
>SB_5807| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 247 KGFPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKDL 381
K F +L L KL LS NR+ + + +L L L GNKI ++
Sbjct: 102 KEFGSLAKLEKLNLSGNRLESFGPSIFRLTQLKVLLLGGNKINNV 146
>SB_15974| Best HMM Match : LRR_1 (HMM E-Value=7.1e-15)
Length = 272
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +1
Query: 220 LNNVGLTTLKGFPTLPML---RKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKDL 381
LN+ L LKG L L R L LS+NR+++ L + L L+++ NK+K L
Sbjct: 46 LNDNDLPNLKGGGQLKDLADARILVLSNNRLTSLPADLDELRSLQVLDVANNKLKSL 102
>SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)
Length = 1328
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Frame = +1
Query: 193 EYTNLQILSLNNVGLTT--LKGFPTL-----PMLRKLELSDNRISNGLTFLSGCKKLAHL 351
EY + + ++ + L+ L+ FP L P L + LS N L CK+L L
Sbjct: 966 EYLLMHLRNVERLDLSGNFLQDFPPLLHEAMPKLEHMNLSHNEFETFPYCLVKCKRLKSL 1025
Query: 352 NLSGNKI 372
+LS NK+
Sbjct: 1026 DLSYNKL 1032
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,593,922
Number of Sequences: 59808
Number of extensions: 270678
Number of successful extensions: 899
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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