Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0978
         (612 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           36   0.001
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            28   0.27 
AF457552-1|AAL68782.1|  311|Anopheles gambiae D7 protein long fo...    26   1.1  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    23   5.9  

>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 35.5 bits (78), Expect = 0.001
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 214 LSLNNVGLTTLKGFPTLPMLRKLELSDNRISN-GLTFLSGCKKLAHLNLSGNKIKDLET 387
           +S N+  L    GF  L  L+ L++ DN IS  G   LSG  +L  L+LS NK+  L T
Sbjct: 252 VSRNHFVLLPAAGFGMLKRLKMLKIHDNEISMVGDKALSGLNELQILDLSSNKLVALPT 310



 Score = 32.7 bits (71), Expect = 0.010
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
 Frame = +1

Query: 130 SQVKELNLDNCRSTNIVGLT-----DEYTNLQILSLNNVGLTTLKG--FPTLPMLRKLEL 288
           S + EL + +  S  +V L      D   ++Q + L N  ++ L    F  L  L+ L+L
Sbjct: 290 SGLNELQILDLSSNKLVALPTDLFRDPAQSIQEIYLQNNSISVLSPGLFSKLEQLQALDL 349

Query: 289 SDNRIS----NGLTFLSGCKKLAHLNLSGNKIKDLET 387
           S N+++    N  TF +G  +L  LNL+ NKI  LE+
Sbjct: 350 SQNQLTSAWVNRDTF-AGLIRLVLLNLASNKITKLES 385



 Score = 27.9 bits (59), Expect = 0.27
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +1

Query: 181 GLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISN-GLTFLSGCKKLAHLNL 357
           G+ + Y  L+++S NN+   T K F  LP L+ L ++ N+IS            +  + L
Sbjct: 509 GMNNLY-GLRLIS-NNIENFTRKAFKDLPSLQILNVARNKISYIEKGAFEPAVSVQAIRL 566

Query: 358 SGNKIKDLETL 390
            GN + D++ L
Sbjct: 567 DGNLLSDIDGL 577



 Score = 24.6 bits (51), Expect = 2.5
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 202 NLQILSL--NNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIK 375
           +LQIL++  N +       F     ++ + L  N +S+    L+    L  LN+S NK++
Sbjct: 536 SLQILNVARNKISYIEKGAFEPAVSVQAIRLDGNLLSDIDGLLTSMPNLVWLNISDNKLE 595

Query: 376 DLE 384
             +
Sbjct: 596 HFD 598



 Score = 23.4 bits (48), Expect = 5.9
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 202 NLQILSLNNVGLTTLKG--FPTLPMLRKLELSDNRISN 309
           NL++L L+   + +L    F +L  LR L +S NR+ +
Sbjct: 172 NLEVLDLSTNNIWSLPDHLFCSLSGLRSLNISSNRLQD 209


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 27.9 bits (59), Expect = 0.27
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +1

Query: 262 LPMLRKLELSDNRI-SNGLTFLSGCKKLAHLNLSGNKIKDL 381
           L  L++L+LS N + S    F+    +L++LNL+ N+++DL
Sbjct: 151 LSKLQRLDLSQNNMWSVPDGFICPLARLSYLNLTQNRLRDL 191



 Score = 26.2 bits (55), Expect = 0.83
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +1

Query: 151 LDNCRSTNIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISN-GLTFLS 327
           +DN       GL  + T+L++ S N +     + F  L  L +LELS NR++N      S
Sbjct: 222 IDNLPPAIFSGL-GKLTDLRLQS-NGLNYIADRAFEGLVSLSRLELSLNRLTNLPPELFS 279

Query: 328 GCKKLAHLNLSGNKIKDL 381
             K +  + L  N +  L
Sbjct: 280 EAKHIKEIYLQNNSLNVL 297



 Score = 25.8 bits (54), Expect = 1.1
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 196 YTNLQILSLN-NVGLTTLKGFPTLPMLRKLELSDNRISN 309
           ++ LQ L LN N  L        +P+LR L+L +N ISN
Sbjct: 428 HSALQELHLNGNKLLQVPDALYDVPLLRTLDLGENHISN 466


>AF457552-1|AAL68782.1|  311|Anopheles gambiae D7 protein long form
           protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = +3

Query: 72  WYIYEHGKEDHL--GTQRE 122
           WY+YE   EDHL  G  RE
Sbjct: 31  WYVYERCHEDHLPSGPNRE 49


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -2

Query: 356 RFKCASFLQPLRKVSPFDILLSDSSNFLSI 267
           +F+     QP  +VSP+D++L   ++ +S+
Sbjct: 579 KFRLQLVGQPRVEVSPYDVVLQGGNSSISL 608


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 504,248
Number of Sequences: 2352
Number of extensions: 9098
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59711994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)