Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0978
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    36   2e-04
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 36.3 bits (80), Expect = 2e-04
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
 Frame = +1

Query: 76   IFMNMEKRIILERRGRDPSQVKELNLDNCRSTNIVGLTDEYTNLQILSLNNVGLTTLKG- 252
            +   ++  + + R+      V    +++ ++    GL     NLQIL L +  +  LKG 
Sbjct: 805  VLRELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLN----NLQILHLEDNRIRELKGF 860

Query: 253  -FPTLPMLRKLELSDNRIS--NGLTFLSGCKKLAHLNLSGNKI 372
             F  L  LR+L L +N I     LTFL   + L  L LSGN++
Sbjct: 861  EFERLSHLRELYLQNNLIGFIGNLTFLP-LRSLEILRLSGNRL 902



 Score = 27.5 bits (58), Expect = 0.11
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +1

Query: 199 TNLQILSLNNVGLTTLK-GFPTLPMLRKLELSDNRISNGLT-FLSGCKKLAHLNLSGNKI 372
           ++L+ L L+   LT++      L +L+ L+L +NRISN          +L  L L GN I
Sbjct: 431 SDLKELDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDI 490

Query: 373 KDL 381
            +L
Sbjct: 491 GNL 493


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 462 VFNASNIIIE*VKI-LQILESFKRLQGF 382
           + N S+I+ E  +  LQ+LESFKR   F
Sbjct: 281 LINCSDILEEFERNRLQLLESFKRKVNF 308


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 451 SIEDYKSKVFAMHPSLKYLD 510
           S+ D+K+ +F +    KY D
Sbjct: 23  SLRDFKANIFQVKYQWKYFD 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,584
Number of Sequences: 438
Number of extensions: 2416
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)