Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0977
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.55 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   9.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   9.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 99   SVPSHRSNITARVTCSSPPLKIQNQ 173
            S  S+ +N+T  +T   PP+K+Q+Q
Sbjct: 951  SSASNVTNVTTNLTTILPPVKVQSQ 975


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
 Frame = -2

Query: 327 FLPVSRSHNLQE------LSPPPVMRLIDCQSTS 244
           ++P S S NLQE      L  PP+ ++ DC +TS
Sbjct: 398 YIPESSS-NLQEKTKIDLLEIPPIRKISDCSTTS 430


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
 Frame = +2

Query: 149 SAAKDSKPNVWWSLNGERLGTFNG----------HGGVIWCLDVDWQSINLITGGGDSSC 298
           SAA +  P V W+L+G  L T NG          HG VI  +++   S  ++  GG+ SC
Sbjct: 444 SAAGNPTPQVTWALDGFALPT-NGRFMIGQYVTVHGDVISHVNI---SHVMVEDGGEYSC 499


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
 Frame = +2

Query: 149 SAAKDSKPNVWWSLNGERLGTFNG----------HGGVIWCLDVDWQSINLITGGGDSSC 298
           SAA +  P V W+L+G  L T NG          HG VI  +++   S  ++  GG+ SC
Sbjct: 444 SAAGNPTPQVTWALDGFALPT-NGRFMIGQYVTVHGDVISHVNI---SHVMVEDGGEYSC 499


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +3

Query: 192  TANVLALSTATVV*YGALTSTGSQLISSQVVATVPAGYGIWRQAKILQHSNPTLL 356
            T   L   T  +       S  + +I+   V  +P+G GI+ +   +  S+ T+L
Sbjct: 1089 TCTTLTSQTIRISWMSPPLSAANGVITGYKVIVIPSGGGIYTKDTKITSSSETIL 1143


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/32 (21%), Positives = 18/32 (56%)
 Frame = +2

Query: 398 YTTDKAMGHPCEVFVIDTRTIDETVSGQAPIL 493
           ++T K++  P  +F++     D  ++ + P+L
Sbjct: 82  FSTSKSLRTPSNMFIVSLAIFDIIMAFEMPML 113


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 263 INLITGGGDSSCRLWDLETG 322
           IN+I    D+  RLW ++TG
Sbjct: 110 INIIRVRVDACDRLWGVDTG 129


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 693 KQL*TLCRHEKSCI 652
           K L   CR EKSCI
Sbjct: 140 KDLSYACREEKSCI 153


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 693 KQL*TLCRHEKSCI 652
           K L   CR EKSCI
Sbjct: 140 KDLSYACREEKSCI 153


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/32 (21%), Positives = 18/32 (56%)
 Frame = +2

Query: 398 YTTDKAMGHPCEVFVIDTRTIDETVSGQAPIL 493
           ++T K++  P  +F++     D  ++ + P+L
Sbjct: 82  FSTSKSLRTPSNMFIVSLAIFDIIMAFEMPML 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,246
Number of Sequences: 438
Number of extensions: 5084
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)