Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0976
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    27   3.4  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    26   4.5  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   5.9  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   7.8  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    25   7.8  
SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr 1||...    25   7.8  

>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 198 STARCISNHPMKFVEAQDRWREMDNVSKRWKLIYRAPMDN 317
           S  + +S++P+ F   ++  +   N S RW L+     DN
Sbjct: 78  SMLQLLSDYPLAFNSTENNQKLQTNPSARWSLLDSMDFDN 117


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 479 IPWQLYSIPCCCESIAFKIRNTTLPRWRRL 568
           + W +  +PC CE+I    R+  L   RRL
Sbjct: 598 LEWPVVFLPCLCENIIPHSRSDDLDEERRL 627


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 332  YNLSYIYYWYHWTQWL 379
            YN  Y Y  Y+W  WL
Sbjct: 1211 YNFEYEYITYNWPHWL 1226


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 137 CKYELFTCNNVDW 175
           C+ ELF C N DW
Sbjct: 601 CQSELFNCENSDW 613


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 468 LLDRWL*PHYLPVVLDYSNQLGRKQTFH 385
           LL R++ P  +P +LDY   L +   FH
Sbjct: 315 LLSRFISPSAVPDLLDYERILNQMNKFH 342


>SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 118

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 322 RTLSIGALYINFHRLETLSISLH 254
           ++ S    Y+ FH L T+++SLH
Sbjct: 36  KSWSTACTYLMFHSLATMAVSLH 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,772
Number of Sequences: 5004
Number of extensions: 63509
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)