BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0976 (689 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 27 3.4 SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 26 4.5 SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 26 5.9 SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 25 7.8 SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 25 7.8 SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr 1||... 25 7.8 >SPCC1393.08 |||transcription factor, zf-GATA type |Schizosaccharomyces pombe|chr 3|||Manual Length = 557 Score = 26.6 bits (56), Expect = 3.4 Identities = 11/40 (27%), Positives = 20/40 (50%) Frame = +3 Query: 198 STARCISNHPMKFVEAQDRWREMDNVSKRWKLIYRAPMDN 317 S + +S++P+ F ++ + N S RW L+ DN Sbjct: 78 SMLQLLSDYPLAFNSTENNQKLQTNPSARWSLLDSMDFDN 117 >SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Schizosaccharomyces pombe|chr 1|||Manual Length = 887 Score = 26.2 bits (55), Expect = 4.5 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +2 Query: 479 IPWQLYSIPCCCESIAFKIRNTTLPRWRRL 568 + W + +PC CE+I R+ L RRL Sbjct: 598 LEWPVVFLPCLCENIIPHSRSDDLDEERRL 627 >SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase Gpt1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1448 Score = 25.8 bits (54), Expect = 5.9 Identities = 8/16 (50%), Positives = 9/16 (56%) Frame = +2 Query: 332 YNLSYIYYWYHWTQWL 379 YN Y Y Y+W WL Sbjct: 1211 YNFEYEYITYNWPHWL 1226 >SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein Mug36|Schizosaccharomyces pombe|chr 2|||Manual Length = 1646 Score = 25.4 bits (53), Expect = 7.8 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = +2 Query: 137 CKYELFTCNNVDW 175 C+ ELF C N DW Sbjct: 601 CQSELFNCENSDW 613 >SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 457 Score = 25.4 bits (53), Expect = 7.8 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -3 Query: 468 LLDRWL*PHYLPVVLDYSNQLGRKQTFH 385 LL R++ P +P +LDY L + FH Sbjct: 315 LLSRFISPSAVPDLLDYERILNQMNKFH 342 >SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 118 Score = 25.4 bits (53), Expect = 7.8 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = -2 Query: 322 RTLSIGALYINFHRLETLSISLH 254 ++ S Y+ FH L T+++SLH Sbjct: 36 KSWSTACTYLMFHSLATMAVSLH 58 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,959,772 Number of Sequences: 5004 Number of extensions: 63509 Number of successful extensions: 152 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 144 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 152 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 319939482 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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