Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0976
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22117| Best HMM Match : p450 (HMM E-Value=1.1e-09)                  30   2.0  
SB_3394| Best HMM Match : DUF1203 (HMM E-Value=2.7)                    29   4.7  
SB_28434| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_7487| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_38124| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_57926| Best HMM Match : I-set (HMM E-Value=3.5e-39)                 28   8.2  

>SB_22117| Best HMM Match : p450 (HMM E-Value=1.1e-09)
          Length = 307

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 269 IHFSPSILSFYKFHWVIRNTSCRAFNFDYVPSSRRY 162
           IHFSPS+ +F+     IR    RA   D V   RR+
Sbjct: 163 IHFSPSVTAFHSLGKSIRFIQTRAVTQDCVIQGRRF 198


>SB_3394| Best HMM Match : DUF1203 (HMM E-Value=2.7)
          Length = 365

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 466 IGSLAITTLSPSSTGLFKSAWSKTNIP 386
           +  +AI T+ P++T L+K  W +T  P
Sbjct: 198 VTGMAILTMDPNATKLYKPTWGRTRGP 224


>SB_28434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 466 IGSLAITTLSPSSTGLFKSAWSKTNIP 386
           +  +AI T+ P++T L+K  W +T  P
Sbjct: 80  VTGMAILTMDPNATKLYKPTWGRTRGP 106


>SB_7487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 242 FYKFHWVIRNTSCRAFNFDYVPSSRRYC 159
           FY F    R+  CR F F Y+P     C
Sbjct: 114 FYSFALYARDDYCRIFRFCYIPECSSLC 141


>SB_38124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 317 CPKLCYNLSYIYYWYHWTQWL 379
           CPK+  +L  +YY YH+  WL
Sbjct: 418 CPKVYMHLIVVYYNYHFYFWL 438


>SB_57926| Best HMM Match : I-set (HMM E-Value=3.5e-39)
          Length = 788

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 520 TFTATWNAIKLPRYTIHSIGSLAITTLSPSSTGLFK 413
           T+T   +++  PR  I + GSLAIT +  S  G +K
Sbjct: 453 TWTKDGSSVTDPRMQILANGSLAITAVHDSDAGTYK 488


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,881,103
Number of Sequences: 59808
Number of extensions: 415729
Number of successful extensions: 938
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)