Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0976
         (689 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3933|AAS64771.1|  229|Drosophila melanogaster CG33228-P...    53   3e-07
BT022894-1|AAY55310.1|  424|Drosophila melanogaster IP12509p pro...    31   1.5  
AE014134-1236|AAN10624.2|  424|Drosophila melanogaster CG31907-P...    31   1.5  
AY118918-1|AAM50778.1|  446|Drosophila melanogaster LD22559p pro...    29   7.9  
AE014297-2416|AAF55475.1|  446|Drosophila melanogaster CG18012-P...    29   7.9  

>AE013599-3933|AAS64771.1|  229|Drosophila melanogaster CG33228-PA
           protein.
          Length = 229

 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 29/132 (21%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
 Frame = +3

Query: 267 DNVSKRWKLIYRAPMDNVLNFVXXXXXXXXXXIGLSGLYYGMFVFDQADLNNPVLLGDNV 446
           D +   +KLIYRAP+++ + +           +     Y+     +  D+   +   D  
Sbjct: 65  DRLPDNYKLIYRAPIESYVTWTKNISTATTTVLAAVAAYHYATTINYLDMVQKM---DIA 121

Query: 447 VIANDPIECIVYLGSFIAFHVAVKVLLSKYVIRLYQDGDDYLAVFRGHIYNSIKKHKF-- 620
           ++ +   +   ++G F+  ++A++  ++KY +R+Y+  + Y+AV+   +     KH F  
Sbjct: 122 ILVSQESDLYYFVGGFLLINLAIRAFVAKYPLRIYKSSEKYVAVYGSQLPIGTVKHYFER 181

Query: 621 -HLNEFKK-LNP 650
             + E+K  LNP
Sbjct: 182 GQIAEYKNFLNP 193


>BT022894-1|AAY55310.1|  424|Drosophila melanogaster IP12509p
           protein.
          Length = 424

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
 Frame = -2

Query: 325 FRTLSIGALYINF-HRLETLSISLHRS*ASTNFIG*FEIHLAVL------LILIMYLPVD 167
           F  L  GA+Y    HRL   SI +H+    TN I  F+++  +L      L + +Y+PV 
Sbjct: 47  FEDLKTGAVYCQLMHRLFPNSIQIHKVKFYTNDISDFQLNFRLLNNCFQKLRVTVYMPVH 106

Query: 166 --VIARKQFIFTNIVF 125
              +   Q +F N ++
Sbjct: 107 ELTLGHNQVVFCNWIY 122


>AE014134-1236|AAN10624.2|  424|Drosophila melanogaster CG31907-PA
           protein.
          Length = 424

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
 Frame = -2

Query: 325 FRTLSIGALYINF-HRLETLSISLHRS*ASTNFIG*FEIHLAVL------LILIMYLPVD 167
           F  L  GA+Y    HRL   SI +H+    TN I  F+++  +L      L + +Y+PV 
Sbjct: 47  FEDLKTGAVYCQLMHRLFPNSIQIHKVKFYTNDISDFQLNFRLLNNCFQKLRVTVYMPVH 106

Query: 166 --VIARKQFIFTNIVF 125
              +   Q +F N ++
Sbjct: 107 ELTLGHNQVVFCNWIY 122


>AY118918-1|AAM50778.1|  446|Drosophila melanogaster LD22559p
           protein.
          Length = 446

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 487 PRYTIHSIGSLAITTLSPSSTGLFKSAWSKTNI 389
           PR  IH + ++ +T L+P    LFK+ W   ++
Sbjct: 57  PRCRIHELTAVPVTNLTPKLRLLFKAFWQTLSL 89


>AE014297-2416|AAF55475.1|  446|Drosophila melanogaster CG18012-PA
           protein.
          Length = 446

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 487 PRYTIHSIGSLAITTLSPSSTGLFKSAWSKTNI 389
           PR  IH + ++ +T L+P    LFK+ W   ++
Sbjct: 57  PRCRIHELTAVPVTNLTPKLRLLFKAFWQTLSL 89


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,762,674
Number of Sequences: 53049
Number of extensions: 609220
Number of successful extensions: 1189
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)