Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0976
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-5|AAB53832.2|  621|Caenorhabditis elegans Hypothetical pr...    32   0.44 
U00048-4|AAM15547.1|  751|Caenorhabditis elegans Hypothetical pr...    32   0.44 
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon gu...    29   3.1  
U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon gu...    29   3.1  
AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.      29   3.1  
AF125963-3|AAD14744.2|  356|Caenorhabditis elegans Serpentine re...    28   5.5  
Z81497-2|CAB04078.1|  781|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U00048-5|AAB53832.2|  621|Caenorhabditis elegans Hypothetical
           protein C05D11.7a protein.
          Length = 621

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -1

Query: 302 SVY*FPSFRNVIHFSPSILSFYKFHWVIRNTSCRAFNFDYVPSSRRYCT*TIHIYKH 132
           SVY   SF +VI F+ S  + Y+FH+   N   + F        R Y + + H + H
Sbjct: 498 SVYDVDSFEHVIDFTKSHEALYEFHYRDENQVMKTFGLFTDSQQRPYSSASQHQHHH 554


>U00048-4|AAM15547.1|  751|Caenorhabditis elegans Hypothetical
           protein C05D11.7b protein.
          Length = 751

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -1

Query: 302 SVY*FPSFRNVIHFSPSILSFYKFHWVIRNTSCRAFNFDYVPSSRRYCT*TIHIYKH 132
           SVY   SF +VI F+ S  + Y+FH+   N   + F        R Y + + H + H
Sbjct: 516 SVYDVDSFEHVIDFTKSHEALYEFHYRDENQVMKTFGLFTDSQQRPYSSASQHQHHH 572


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical
           protein F36H2.3 protein.
          Length = 1388

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 544 RITYFESNTFTATWNAIKLPRYTIHSIGSLAITTLSPSSTGLF 416
           +ITY + NTF AT  A+     T +S  +++ T++S    G+F
Sbjct: 853 QITYSQGNTFDATRPALTTATLTCNSGYTISGTSISACMNGVF 895



 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -2

Query: 544 RITYFESNTFTATWNAIKLPRYTIHSIGSLAITTLSPSSTGLF 416
           ++TY + NTF AT  A+ +   T +S  +++ T+ S    G+F
Sbjct: 712 QVTYNQGNTFDATRPALTIATLTCNSGYTISGTSTSTCINGVF 754


>U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon
           guidance protein 3,isoform b protein.
          Length = 1273

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 490 LPRYTIHSIGSLAITTLSPSSTGLFK 413
           +PRYT+HS G+L I  +  S +G ++
Sbjct: 179 MPRYTLHSDGNLIIDPVDRSDSGTYQ 204


>U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon
           guidance protein 3,isoform a protein.
          Length = 1269

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 490 LPRYTIHSIGSLAITTLSPSSTGLFK 413
           +PRYT+HS G+L I  +  S +G ++
Sbjct: 179 MPRYTLHSDGNLIIDPVDRSDSGTYQ 204


>AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.
          Length = 1273

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 490 LPRYTIHSIGSLAITTLSPSSTGLFK 413
           +PRYT+HS G+L I  +  S +G ++
Sbjct: 179 MPRYTLHSDGNLIIDPVDRSDSGTYQ 204


>AF125963-3|AAD14744.2|  356|Caenorhabditis elegans Serpentine
           receptor, class h protein10 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = -2

Query: 238 TNFIG*FEIHLAVLLILIMYLPVDVIARKQFIFTN-----IVFSHLLHFIAST*FS 86
           +NF+  FE HL+V++  ++YLP  VI      F       I F  +  FIAST +S
Sbjct: 62  SNFL--FEFHLSVVMKPVLYLPYPVIRFSGAFFLTYINGFISFCIMYLFIASTGWS 115


>Z81497-2|CAB04078.1|  781|Caenorhabditis elegans Hypothetical
           protein F10C2.5 protein.
          Length = 781

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +3

Query: 588 HIYNSIKKHKFHLNEFKKLNPTFVVTWGDGRFSL 689
           H YN    H F L+E K +      TWG    SL
Sbjct: 52  HAYNGYLDHAFPLDELKPITCVGQDTWGSFSLSL 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,953,882
Number of Sequences: 27780
Number of extensions: 339840
Number of successful extensions: 839
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)