Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0976
(689 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 23 2.1
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 23 2.7
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 23 2.7
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 23 3.6
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 23 3.6
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 23 3.6
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 23 3.6
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 22 6.3
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 22 6.3
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 22 6.3
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 21 8.4
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 21 8.4
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.1
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = -2
Query: 508 TWNAIKLPRYTIHSIGSLAITTLSPSSTGLFKSAWSKTNIP 386
T A++LP ++ IG + + TG+ K T P
Sbjct: 242 TDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGMLVTFAP 282
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 23.0 bits (47), Expect = 2.7
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = -2
Query: 508 TWNAIKLPRYTIHSIGSLAITTLSPSSTGLFKSAWSKTNIP 386
T A++LP ++ IG + + TG+ K T P
Sbjct: 185 TDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAP 225
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.7
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = -2
Query: 508 TWNAIKLPRYTIHSIGSLAITTLSPSSTGLFKSAWSKTNIP 386
T A++LP ++ IG + + TG+ K T P
Sbjct: 242 TDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAP 282
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 22.6 bits (46), Expect = 3.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 293 NIQSANG*CPKLCYNLSYI 349
N + N C KL YN++YI
Sbjct: 101 NNNNYNNNCKKLYYNINYI 119
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 3.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 293 NIQSANG*CPKLCYNLSYI 349
N + N C KL YN++YI
Sbjct: 101 NNNNYNNNCKKLYYNINYI 119
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 3.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 293 NIQSANG*CPKLCYNLSYI 349
N + N C KL YN++YI
Sbjct: 101 NNNNYNNNCKKLYYNINYI 119
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 3.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 293 NIQSANG*CPKLCYNLSYI 349
N + N C KL YN++YI
Sbjct: 101 NNNNYNNNCKKLYYNINYI 119
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.8 bits (44), Expect = 6.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 308 NG*CPKLCYNLSYI 349
N C KL YN++YI
Sbjct: 101 NNNCKKLYYNINYI 114
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.8 bits (44), Expect = 6.3
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +2
Query: 146 ELFTCNNVDWKVHNQN*KHGKMYFESPN 229
++ + NN ++K +N N K+Y+ N
Sbjct: 302 KIISSNNYNYKNYNNNYNSKKLYYNIIN 329
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.3
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +2
Query: 146 ELFTCNNVDWKVHNQN*KHGKMYFESPN 229
++ + NN ++K +N N K+Y+ N
Sbjct: 313 KIISSNNYNYKNYNNNYNSKKLYYNIIN 340
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 21.4 bits (43), Expect = 8.4
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = -1
Query: 512 SNMECYKAAKVYNTFYW 462
SNM+ YK V F W
Sbjct: 67 SNMDMYKDKNVVQKFLW 83
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 21.4 bits (43), Expect = 8.4
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = -1
Query: 512 SNMECYKAAKVYNTFYW 462
SNM+ YK V F W
Sbjct: 67 SNMDMYKDKNVVQKFLW 83
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,938
Number of Sequences: 438
Number of extensions: 4202
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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