Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0976
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ...    30   1.7  
At5g18830.1 68418.m02237 squamosa promoter-binding protein-like ...    30   1.7  
At1g69280.1 68414.m07943 expressed protein                             29   2.2  
At5g38680.1 68418.m04677 kelch repeat-containing F-box family pr...    28   5.1  
At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly ident...    28   6.7  

>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 775

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 455 QRSNRMYCIPWQLYSIPCCCESIAFKIRNTTLPRWRRLSGG 577
           +R  R+ C  +    +PC C  +  K+ +  LP+ +R+ GG
Sbjct: 92  KRDPRLICSNFIEGMLPCSCPELDQKLEDAELPKKKRVRGG 132


>At5g18830.1 68418.m02237 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 801

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 455 QRSNRMYCIPWQLYSIPCCCESIAFKIRNTTLPRWRRLSGG 577
           +R  R+ C  +    +PC C  +  K+ +  LP+ +R+ GG
Sbjct: 92  KRDPRLICSNFIEGMLPCSCPELDQKLEDAELPKKKRVRGG 132


>At1g69280.1 68414.m07943 expressed protein
          Length = 400

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 443 CGYSQRSNRMYCIPWQLYSIPCCCESIAFKIRNTTLPR 556
           C Y+     ++C  W  +S  CCC S + K+ +  + R
Sbjct: 344 CDYNSSCGWLFCCHWSCWSC-CCCSSSSKKVVDDEMTR 380


>At5g38680.1 68418.m04677 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 357

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 452 SQRSNRMYC-IPWQLYSIPCCCESIAFKIRNTTLPRWRRLSG 574
           S +S+  YC I   LYS+        F+  +T L RWR+L G
Sbjct: 257 SYKSSYDYCEIENVLYSVEKTWRGTVFRWYDTELGRWRKLEG 298


>At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly
           identical to ania-6a type cyclin [Arabidopsis thaliana]
           GI:13924511
          Length = 416

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 648 DLTF*THLNEIYVFLSNYICVL*TPPDNR 562
           ++ F  H+   + F+SNY+  L TPP+ R
Sbjct: 144 EMGFVCHVEHPHKFISNYLATLETPPELR 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,816,977
Number of Sequences: 28952
Number of extensions: 305213
Number of successful extensions: 666
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)