Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0975
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   2.4  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    24   5.6  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    23   9.8  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    23   9.8  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    23   9.8  
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy...    23   9.8  

>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 52  NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKY 210
           N N    +GI  E+SK+ +   KN + SS + K     V+ +    I+G+K +
Sbjct: 376 NINEINEEGIMTEVSKYASLVNKNYEISSGKLKERQVAVRAR----IEGIKAH 424


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 61  LTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHII 192
           L  + G+W ++ +F  E     KCS    KL G  V  K + ++
Sbjct: 869 LLMHHGLWQKLEEFLGELRTQTKCS---IKLSGREVVAKMLVVL 909


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 12/52 (23%), Positives = 21/52 (40%)
 Frame = +1

Query: 91  ISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDAN 246
           ++ + N  +     S +E    GD     N    +  +KY+E +   TD  N
Sbjct: 537 VASYDNTDDNEYSVSKSELYATGDTNNTTNQGYENSERKYVESSKYETDLKN 588


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +1

Query: 7   EVIHEGTCPELKPVNNFNL---TAYQGIWYEISKFPNE-SEKNGKCSSAEYKLEG 159
           E +   T P+LKPV+ +NL   T+  GI + + +  ++ SE++   SS     EG
Sbjct: 174 EQLKHPTKPDLKPVSAWNLLPNTSMAGIQHLMLRVADDLSERSHSYSSLVNLQEG 228


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 179 TCISSTASRSI*KGRPSSPTMPIKPQS*QSLLSLEKYL 292
           +C+   + + +  G PSS + P+K  S  + L+ E  L
Sbjct: 249 SCLEVDSVKRLLSGSPSSSSSPLKKDSSSNSLTYEPAL 286


>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 284

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 85  YEISKFPNESEKN--GKCSSAEYKLEGDVVKVK 177
           +E+ K   ES+K   G  S A YKL  ++VK++
Sbjct: 202 FEVIKDLLESDKLTVGASSMARYKLANEIVKMR 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,353,599
Number of Sequences: 5004
Number of extensions: 24993
Number of successful extensions: 53
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)