Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0975
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012... 60 4e-10
02_04_0592 - 24171698-24172285 52 2e-07
07_01_1023 + 8840754-8842988,8843189-8843362 31 0.18
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 31 0.18
08_02_1423 + 26975466-26975508,26976253-26976365,26976505-269765... 29 1.3
12_01_1010 - 10280424-10282003,10283359-10283668,10283749-102839... 27 2.9
05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061 27 2.9
11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673... 26 6.7
11_06_0275 - 21818071-21818192,21818457-21818520,21820699-218209... 26 6.7
05_01_0337 - 2658647-2658722,2658797-2658915,2658995-2659102,265... 26 6.7
04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784 26 6.7
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093 26 6.7
03_05_0510 + 25039408-25039455,25040627-25040641,25040832-250409... 26 6.7
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 26 6.7
10_07_0039 - 12269928-12270103,12270871-12271015,12271066-122710... 26 8.9
02_03_0365 - 18198669-18198809,18198887-18198979,18199078-181991... 26 8.9
>08_02_0805 +
21400345-21400701,21400797-21400975,21401223-21401271,
21401310-21401390,21401988-21402605
Length = 427
Score = 60.1 bits (139), Expect = 4e-10
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Frame = +1
Query: 37 LKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGVKKY 210
+K V N +L Y G WYEI+ FP+ + ++G + A Y L GD VKV N DG + +
Sbjct: 1 MKVVRNLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLNETWTDGRRGH 60
Query: 211 IEGTAKLTDDANKAAKLTVTF 273
IEGTA D + AKL V F
Sbjct: 61 IEGTAYRADPVSDEAKLKVKF 81
>02_04_0592 - 24171698-24172285
Length = 195
Score = 51.6 bits (118), Expect = 2e-07
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Frame = +1
Query: 1 AAEVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKL--EGDVVK 171
AA + + + E+ V ++ Y G WYEI+ PN + ++G+ + A Y L +G V
Sbjct: 2 AAAAVEKKSGSEMTVVRGLDVARYMGRWYEIASLPNFFQPRDGRDTRATYALRPDGATVD 61
Query: 172 VKN-VHIIDGVKKYIEGTAKLTDDANKAAKLTVTF 273
V N G + YI+GTA D A+ AKL V F
Sbjct: 62 VLNETWTSSGKRDYIKGTAYKADPASDEAKLKVKF 96
>07_01_1023 + 8840754-8842988,8843189-8843362
Length = 802
Score = 31.5 bits (68), Expect = 0.18
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 19 EGTCPELKP-VNNFNLTAYQGIW-YEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHII 192
EG C + + + NL G+W +++S N S K G C A D++ KN+ I+
Sbjct: 288 EGLCEDANDTIPSTNLMITAGVWGHDVS---NYSAKEGLCEEAN-----DIIPRKNLTIV 339
Query: 193 DGV 201
DGV
Sbjct: 340 DGV 342
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 31.5 bits (68), Expect = 0.18
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 46 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGD 162
V NFN+ + G WY IS N + C E+++EGD
Sbjct: 202 VKNFNMADFNGKWY-ISSGLNPTFDTFDCQLHEFRVEGD 239
>08_02_1423 +
26975466-26975508,26976253-26976365,26976505-26976561,
26976607-26976801,26976912-26977060,26977145-26977307,
26977865-26977957,26978075-26978158,26978865-26979004,
26979093-26979192
Length = 378
Score = 28.7 bits (61), Expect = 1.3
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 100 FPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTA-KLTDDANKAAKLTVTFK 276
F S G EY+ E V +V +G+KK ++G A K +D+ L
Sbjct: 209 FAEPSGTEGTEEEGEYEDESIVHHTASVGDDEGLKKALDGGADKDEEDSEGRRALHFACG 268
Query: 277 FGEISRDGSV 306
+GE+S D ++
Sbjct: 269 YGEVSNDKNI 278
>12_01_1010 -
10280424-10282003,10283359-10283668,10283749-10283939,
10283967-10284279
Length = 797
Score = 27.5 bits (58), Expect = 2.9
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 85 YEISKFPNESEKNGKCSSAEYKLEG-DVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAK 258
YE+S++ SEK G S A L G KV+N+ +D +K +E + + A+
Sbjct: 200 YELSEYKPLSEKIGSVSGAILILVGLSSSKVENLLTVDRAEKTLENLESCEKNVRQMAE 258
>05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061
Length = 691
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 106 NESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDD 240
N+ K GK + Y L+ + +H+I G+ + G TDD
Sbjct: 476 NKICKKGKAALHRYSLQNNEPGGYELHVICGMNNLVSGPVYCTDD 520
>11_06_0684 -
26264540-26264661,26264926-26264989,26267168-26267371,
26268322-26268456,26269174-26269492,26269581-26269631,
26269721-26269864,26270080-26270160,26270252-26270302,
26270392-26270535,26270750-26270833,26270912-26271055,
26271147-26271196
Length = 530
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 68 LTKASGMKSRNFPTNLRRTANALQLNTNWKVTW*R 172
+ K G +SRN+ N+R +AL +++ W R
Sbjct: 340 MCKEKGKRSRNYMDNIRFIVDALACIIQYRLDWIR 374
>11_06_0275 -
21818071-21818192,21818457-21818520,21820699-21820902,
21821852-21821986,21822704-21823022,21823111-21823161,
21823251-21823394,21823610-21823690,21823782-21823832,
21823922-21824065,21824280-21824363,21824442-21824585,
21824677-21824726
Length = 530
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 68 LTKASGMKSRNFPTNLRRTANALQLNTNWKVTW*R 172
+ K G +SRN+ N+R +AL +++ W R
Sbjct: 340 MCKEKGKRSRNYMDNIRFIVDALACIIQYRLDWIR 374
>05_01_0337 -
2658647-2658722,2658797-2658915,2658995-2659102,
2659187-2659255,2659561-2659655,2659740-2659944,
2660125-2660211,2660291-2660405,2660696-2660802,
2661054-2661146,2661243-2661290,2661345-2661544,
2661993-2662128,2662228-2662291,2662779-2662912
Length = 551
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 184 HIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEIS 291
H+ID VKK ++G A+L +A A L + E S
Sbjct: 440 HLIDNVKKTVKGRAQLGVEAFADALLVIPKTLAENS 475
>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
Length = 1035
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 10 VIHEGTCPELKPVNNFNLTAYQ 75
V H G+ E+K V NF L YQ
Sbjct: 136 VFHNGSDNEIKDVTNFGLPLYQ 157
>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
Length = 1040
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 10 VIHEGTCPELKPVNNFNLTAYQ 75
V H G+ E+K V NF L YQ
Sbjct: 136 VFHNGSDNEIKDVTNFGLPLYQ 157
>03_05_0510 +
25039408-25039455,25040627-25040641,25040832-25040991,
25041116-25041192,25041324-25042528,25042537-25042621,
25043068-25043130,25043207-25043263,25043299-25043361,
25043560-25043643,25043730-25044320,25044535-25044663
Length = 858
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 338 RSYYSQSPR*CTDPSRD 288
RS++S SPR CT P D
Sbjct: 120 RSFFSSSPRSCTGPELD 136
>01_01_0953 -
7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -1
Query: 126 AVLLRFVGKFRDFIPDALVSCQVEVVHRFQLGAGAFVNNFSS 1
A +LRF+ +F+D IP A + V RF + V+++++
Sbjct: 486 ATVLRFLKEFKDQIPKATALALLPSVIRFLIHESNVVHSYAA 527
>10_07_0039 -
12269928-12270103,12270871-12271015,12271066-12271094,
12271394-12271478
Length = 144
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 97 KFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEG 219
K+ N+ K KC E +EGD + + I+DG ++ + G
Sbjct: 51 KWKNQQRKKIKCG--EPHMEGDFLPSVTIIIMDGGRRAVPG 89
>02_03_0365 -
18198669-18198809,18198887-18198979,18199078-18199138,
18199291-18199336,18199417-18199682,18199766-18200744,
18201012-18201564,18201661-18201909,18201995-18202234
Length = 875
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 135 RAFAVLLRFVGKFRDFIPDALVSCQVEVVH 46
RA A+L R + +FIPDA Q +VVH
Sbjct: 347 RAIAILGRTYNE--EFIPDAYAKVQPQVVH 374
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,664,840
Number of Sequences: 37544
Number of extensions: 158093
Number of successful extensions: 466
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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