Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0975
(342 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08) 38 0.002
SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05) 30 0.56
SB_48642| Best HMM Match : EFG_IV (HMM E-Value=7.1) 27 3.0
SB_13634| Best HMM Match : efhand (HMM E-Value=2e-24) 27 4.0
SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0) 27 5.3
SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.0
SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.0
SB_19312| Best HMM Match : DEP (HMM E-Value=2.5e-09) 26 9.2
SB_55464| Best HMM Match : DEP (HMM E-Value=4.2e-07) 26 9.2
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 26 9.2
SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21) 26 9.2
>SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)
Length = 418
Score = 37.9 bits (84), Expect = 0.002
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Frame = +1
Query: 22 GTCPELKPVNNFNLTAYQGIWYEI-SKFPNES--EKNGKCSSAEYKLEGD----VVKVKN 180
G C + V N+T+Y G WY++ S F E E+N C +A+Y L D VV
Sbjct: 233 GPCQGIDTVPTLNVTSYLGRWYQMYSDFIVEETFERNAVCVTADYTLRKDGKIGVVNSNR 292
Query: 181 VHIIDGVKKYIEGTAKLTDDANKAAKLTVTF 273
DG K I G A D KL V F
Sbjct: 293 DKKPDGELKQITGYA-YQPDPEVPGKLKVHF 322
>SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)
Length = 442
Score = 29.9 bits (64), Expect = 0.56
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 98 NFPTNLRRTANALQLNTNWKVTW*RSRTCISSTASRSI*KGR 223
NF T +AL++ W VTW R C +T S + GR
Sbjct: 33 NFLTLFVFATDALRIRRFWGVTWWRDTRCSRATTSNCLKTGR 74
>SB_48642| Best HMM Match : EFG_IV (HMM E-Value=7.1)
Length = 508
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 88 EISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVK 204
E+ ++ ESE+NGK SS + + V +K + + DG K
Sbjct: 38 EVFEWRFESEENGKMSSV-MTIHSNTVPLKEIGLWDGAK 75
>SB_13634| Best HMM Match : efhand (HMM E-Value=2e-24)
Length = 176
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 202 KKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSV 306
K++IEG ++ + +K +KL F+ ++ DG +
Sbjct: 94 KEFIEGVSQFSVKGDKESKLKFAFRIYDMDNDGYI 128
>SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1157
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 40 KPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEG 159
K V N +L G WYEI+ + NG ++ + G
Sbjct: 78 KAVENLHLDISSGNWYEITIYTGVWRNNGTTANVAATISG 117
>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2631
Score = 26.2 bits (55), Expect = 7.0
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +1
Query: 184 HIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVHYLGD*L**LRH 342
+I D + I TA + + + T T FG+ S +H LG LRH
Sbjct: 92 YINDSLPVLIGSTASIRWELQQGTNATFTITFGDSSETAILHRLGPGRHLLRH 144
>SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 731
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 166 VKVKNVHIIDGVKKYIEGTAKLTDDA 243
+K KN++I D KKY E +L+D A
Sbjct: 305 LKTKNLNIQDSAKKYAEMQHRLSDFA 330
>SB_19312| Best HMM Match : DEP (HMM E-Value=2.5e-09)
Length = 678
Score = 25.8 bits (54), Expect = 9.2
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +1
Query: 31 PELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVV 168
P LK +++ A + +W+ + +++NG + A+ LE V+
Sbjct: 189 PSLKGLDSKCFLAIEAVWWLMHHVDGVADRNGAVALAQRMLEARVI 234
>SB_55464| Best HMM Match : DEP (HMM E-Value=4.2e-07)
Length = 84
Score = 25.8 bits (54), Expect = 9.2
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +1
Query: 31 PELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVV 168
P LK +++ A + +W+ + +++NG + A+ LE V+
Sbjct: 8 PSLKGLDSKCFLAIEAVWWLMHHVDGVADRNGAVALAQRMLEARVI 53
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 25.8 bits (54), Expect = 9.2
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = +3
Query: 186 YHRRRQEVYRRDGQAHRRCQ*SRKANSH 269
YHRRR ++ H C R + H
Sbjct: 457 YHRRRLSIHHHPSSRHHHCHRPRLSKHH 484
>SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)
Length = 1049
Score = 25.8 bits (54), Expect = 9.2
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 82 WYEISKFPNESEKNGKCSSAEYKLEGDVVKVKN--VHIIDGVKKYIEGTAKLTD 237
W+E F K + A+ +LE +VVK+K V + + + + AKL D
Sbjct: 472 WFETVFFYPSDNKYNEERGAQQRLEAEVVKLKQQVVDLAEEAAELQQQKAKLLD 525
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,893,703
Number of Sequences: 59808
Number of extensions: 190126
Number of successful extensions: 500
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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