Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0975
         (342 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ974173-1|ABJ52813.1|  553|Anopheles gambiae serpin 16 protein.       25   0.78 
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   2.4  
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    22   7.2  
AF515734-1|AAO14865.1| 1325|Anopheles gambiae xanthine dehydroge...    21   9.6  

>DQ974173-1|ABJ52813.1|  553|Anopheles gambiae serpin 16 protein.
          Length = 553

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = +1

Query: 100 FPNESEKNGKCSSAEYKLEGDVVKVKN 180
           + ++ E++   ++AE+ L+ DV++V N
Sbjct: 170 YDDDDEEDAAAAAAEFPLQKDVIRVTN 196


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1248

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 147  QTGR*RGEGQERAYHRRRQEVYRRDGQAHRRCQ*SRKANSHF 272
            Q GR     +E    RRR+E+ R   Q  RR + S+    HF
Sbjct: 1178 QNGRAVSSAEE--LERRRREMERTRRQRQRRARDSQAITIHF 1217


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 49  NNFNLTAYQGIWYEISKFPNESE 117
           NNF +++YQ +    S +PN S+
Sbjct: 4   NNFVMSSYQFVNSIASCYPNNSQ 26


>AF515734-1|AAO14865.1| 1325|Anopheles gambiae xanthine
           dehydrogenase protein.
          Length = 1325

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 228 LGRPFYILLDAVDDMHVLDLHH 163
           +GRP   +LD  +DM V    H
Sbjct: 810 MGRPVRCMLDRDEDMAVSGTRH 831


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 332,571
Number of Sequences: 2352
Number of extensions: 6087
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 24075240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)