Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0975
         (342 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    27   0.047
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   1.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   5.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   5.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   5.4  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    20   9.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   9.5  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 27.5 bits (58), Expect = 0.047
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -1

Query: 246 IGIVGELGRPFY---ILLDAVDDMHVLDLHHVTFQFVFS*RAF 127
           +G + E+ R FY   + ++ V +  + D  HVTF+  F  RAF
Sbjct: 145 MGQIREVARHFYHKELQIELVREEILFDTVHVTFKLTFDNRAF 187


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -3

Query: 109 RWEISRFHTRC--LGKLSS*SCSPVSARGRCLRE*LQQ 2
           RW++ +FH  C  +G  S  S   V A GR   E  Q+
Sbjct: 186 RWDLGKFHRVCTQIGS-SMKSVGEVMAIGRKFEEAFQK 222


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 269 LLSLEKYLAMDQCIILATD 325
           LLSLEK    D C +LA+D
Sbjct: 439 LLSLEKTYERDTC-LLASD 456


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 269 LLSLEKYLAMDQCIILATD 325
           LLSLEK    D C +LA+D
Sbjct: 477 LLSLEKTYERDTC-LLASD 494


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 279 WRNISRWISALSW 317
           WRN +R I  + W
Sbjct: 120 WRNATRCIGRIQW 132


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 242 PIKPQS*QSLLSLEKYLAMDQCIILA 319
           P  P + Q LLSLEK     Q + +A
Sbjct: 12  PRTPFTTQQLLSLEKKFREKQYLTIA 37


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 43  PVNNFNLTAYQGI 81
           PVNN NL   Q I
Sbjct: 76  PVNNINLILLQNI 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,670
Number of Sequences: 438
Number of extensions: 1768
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)