Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0975
(342 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58070.1 68418.m07267 lipocalin, putative similar to temperat... 54 3e-08
At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor, pu... 29 0.61
At5g36740.1 68418.m04402 PHD finger family protein 28 1.4
At5g36670.1 68418.m04388 PHD finger family protein 28 1.4
At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative... 28 1.4
At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) simil... 27 3.3
At5g37100.1 68418.m04453 replication protein-related weak simila... 27 4.3
At2g29070.2 68415.m03533 ubiquitin fusion degradation UFD1 famil... 27 4.3
At2g29070.1 68415.m03534 ubiquitin fusion degradation UFD1 famil... 27 4.3
At3g05150.1 68416.m00559 sugar transporter family protein simila... 26 5.7
At2g14800.1 68415.m01677 hypothetical protein 26 5.7
At5g39830.2 68418.m04825 DegP protease, putative contains simila... 26 7.6
At5g39830.1 68418.m04824 DegP protease, putative contains simila... 26 7.6
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i... 26 7.6
At1g59560.1 68414.m06698 expressed protein contains similarity t... 26 7.6
At1g08890.1 68414.m00989 sugar transporter family protein simila... 26 7.6
At5g67460.1 68418.m08505 glycosyl hydrolase family protein 17 si... 25 10.0
At5g37130.1 68418.m04457 tetratricopeptide repeat (TPR)-containi... 25 10.0
At4g34320.1 68417.m04878 expressed protein similar to At14a, GI:... 25 10.0
At4g24670.2 68417.m03532 alliinase family protein contains Pfam ... 25 10.0
At4g24670.1 68417.m03531 alliinase family protein contains Pfam ... 25 10.0
At3g04980.1 68416.m00541 DNAJ heat shock N-terminal domain-conta... 25 10.0
At2g05084.1 68415.m00532 hypothetical protein 25 10.0
>At5g58070.1 68418.m07267 lipocalin, putative similar to temperature
stress-induced lipocalin [Triticum aestivum] GI:18650668
Length = 186
Score = 53.6 bits (123), Expect = 3e-08
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +1
Query: 34 ELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGVKK 207
E++ V N+ Y G WYEI+ FP+ + KNG + A Y L D + V N +G +
Sbjct: 6 EMEVVKGLNVERYMGRWYEIASFPSRFQPKNGVDTRATYTLNPDGTIHVLNETWSNGKRG 65
Query: 208 YIEGTAKLTDDANKAAKLTVTF 273
+IEG+A D + AKL V F
Sbjct: 66 FIEGSAYKADPKSDEAKLKVKF 87
>At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor,
putative (AVDE1) similar to EST gb|N37612
Length = 462
Score = 29.5 bits (63), Expect = 0.61
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 46 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNV 183
V NFN++ + G WY I+ N + C E+ EGD V N+
Sbjct: 204 VQNFNISDFNGKWY-ITSGLNPTFDAFDCQLHEFHTEGDNKLVGNI 248
>At5g36740.1 68418.m04402 PHD finger family protein
Length = 1179
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 130 CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTD 237
C Y EGD + N+ ++DG + E T KLTD
Sbjct: 1020 CLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTD 1055
>At5g36670.1 68418.m04388 PHD finger family protein
Length = 1193
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 130 CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTD 237
C Y EGD + N+ ++DG + E T KLTD
Sbjct: 1034 CLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTD 1069
>At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative
strong similarity to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
Arabidopsis thaliana
Length = 345
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +1
Query: 91 ISKFPNESEKNGKCSSAEYKLEG--DVVKVKNVHI 189
+S FP ES+ + K ++ E+KL G + V VKN+++
Sbjct: 14 VSGFPKESDFDFKTTTVEFKLPGGSNSVLVKNLYL 48
>At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) similar
to COP1-interacting protein 4 (CIP4) [Arabidopsis
thaliana] GI:13160646; supporting cDNA
gi|13160645|dbj|AB036832.1|;
Length = 876
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 115 EKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLT 264
EK+GK SS K + + V+ ++D +++ E L K++K T
Sbjct: 515 EKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKKT 564
>At5g37100.1 68418.m04453 replication protein-related weak
similarity to Replication Protein A 70 kDa DNA-binding
subunit (RP-A) (RF-A) (Replication factor-A protein 1)
(Single-stranded DNA-binding protein) (DMRPA1)
(GI:2498844)(SP:Q24492) [Drosophila melanogaster]
Length = 269
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 46 VNNFNLTAYQGIWYEISKFP-NESEKNGKCSSAEYKLE 156
+NNF + ++G WY I+ F + K SS Y++E
Sbjct: 60 LNNFKPSLFEGKWYYIADFRLKRATSIPKYSSFNYEIE 97
>At2g29070.2 68415.m03533 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 312
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 154 EGDVVKVKNVHIIDGVK-KYIEGTAKLTDDANKAAKLTVTFK 276
EGDV++VKN+ ++ G K T D +N A L T +
Sbjct: 91 EGDVMQVKNISLVKGTYIKLQPHTQDFLDISNPKAILETTLR 132
>At2g29070.1 68415.m03534 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 280
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 154 EGDVVKVKNVHIIDGVK-KYIEGTAKLTDDANKAAKLTVTFK 276
EGDV++VKN+ ++ G K T D +N A L T +
Sbjct: 59 EGDVMQVKNISLVKGTYIKLQPHTQDFLDISNPKAILETTLR 100
>At3g05150.1 68416.m00559 sugar transporter family protein similar
to sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 470
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 92 SRNFPTNLRRTANALQLNTNWKVTW 166
S FP NL+ TA L NW +W
Sbjct: 394 SEIFPINLKGTAGGLVTVVNWLSSW 418
>At2g14800.1 68415.m01677 hypothetical protein
Length = 580
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +2
Query: 74 KASGMKSRNFPTNLRRTANALQLNTNWKVTW*RSRTC 184
K G+KS F N + + N W TW R TC
Sbjct: 175 KLKGLKSWMFKYNFEKRILEKRHNRGWLHTWSRRVTC 211
>At5g39830.2 68418.m04825 DegP protease, putative contains
similarity to DegP protease precursor GI:2565436 from
[Arabidopsis thaliana]
Length = 434
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +1
Query: 157 GDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTV 267
GDVV N+ DGV+K EG D A A L V
Sbjct: 184 GDVVGRVNILASDGVQKNFEGKLVGADRAKDLAVLKV 220
>At5g39830.1 68418.m04824 DegP protease, putative contains
similarity to DegP protease precursor GI:2565436 from
[Arabidopsis thaliana]
Length = 448
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +1
Query: 157 GDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTV 267
GDVV N+ DGV+K EG D A A L V
Sbjct: 184 GDVVGRVNILASDGVQKNFEGKLVGADRAKDLAVLKV 220
>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
identical to cDNA CIP4.1 mRNA for COP1-interacting
protein 4.1, GI:13160649
Length = 976
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 115 EKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAK 258
EK+GK SS K + + V+ ++D +++ E L K++K
Sbjct: 665 EKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSK 712
>At1g59560.1 68414.m06698 expressed protein contains similarity to
apoptosis inhibitors
Length = 338
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 113 LRRTANALQLNTNWKVTW*RSRT 181
L+RTA L NW+ +W R+ T
Sbjct: 78 LKRTAEQQVLRRNWRFSWVRNST 100
>At1g08890.1 68414.m00989 sugar transporter family protein similar
to sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 464
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 92 SRNFPTNLRRTANALQLNTNWKVTW 166
S FP N++ TA +L +NW +W
Sbjct: 385 SEVFPVNVKITAGSLVTVSNWFFSW 409
>At5g67460.1 68418.m08505 glycosyl hydrolase family protein 17
similar to beta-1,3-glucanase GI:6714534 from [Salix
gilgiana]
Length = 380
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 218 GRPSSPTMPIKPQS*QSLLSLEKYLAMDQCI 310
G PS PT+P P+ QS + + +++ C+
Sbjct: 243 GSPSPPTIPYFPEPSQSPMESNQGISLPPCL 273
>At5g37130.1 68418.m04457 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 856
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 139 LKSICRSSQIRWEISRFHTR 80
L+ C ++RWE SR+ TR
Sbjct: 401 LRCFCDLLRVRWESSRYRTR 420
>At4g34320.1 68417.m04878 expressed protein similar to At14a,
GI:11994571 and GI:11994573 [Arabidopsis thaliana]
Length = 374
Score = 25.4 bits (53), Expect = 10.0
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 109 ESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKL 261
E E G SAE+ +E + VK+ ID +KK +E K ++ A L
Sbjct: 301 EIEITGMVKSAEFAVEHNAVKIG----IDDIKKKLEVFKKNVEELGTQADL 347
>At4g24670.2 68417.m03532 alliinase family protein contains Pfam
profiles: PF04864 allinase C-terminal domain, PF04863
alliinase EGF-like domain
Length = 440
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 49 NNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIID 195
++++ TAY IW +S +ES S K+E D ++ N+ D
Sbjct: 37 DSWDRTAYVSIWPVVSTTASESSSLSSASCNYSKIEEDDDRIINLKFGD 85
>At4g24670.1 68417.m03531 alliinase family protein contains Pfam
profiles: PF04864 allinase C-terminal domain, PF04863
alliinase EGF-like domain
Length = 440
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 49 NNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIID 195
++++ TAY IW +S +ES S K+E D ++ N+ D
Sbjct: 37 DSWDRTAYVSIWPVVSTTASESSSLSSASCNYSKIEEDDDRIINLKFGD 85
>At3g04980.1 68416.m00541 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 1165
Score = 25.4 bits (53), Expect = 10.0
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 112 SEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVT 270
S K + S A+ +GD V N G + E K T + NK+ KL V+
Sbjct: 355 SRKKPQVSYAKEGSDGDFVSPPNKKTKSGFEFESEPNKKQTAEDNKSPKLAVS 407
>At2g05084.1 68415.m00532 hypothetical protein
Length = 258
Score = 25.4 bits (53), Expect = 10.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 46 VNNFNLTAYQGIWYEISKF 102
+NNF T ++G WY + F
Sbjct: 60 MNNFKTTLFEGKWYYLQHF 78
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,020,326
Number of Sequences: 28952
Number of extensions: 129505
Number of successful extensions: 380
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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