Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0972
         (639 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   6.6  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   8.7  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   8.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.7  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   8.7  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 151 HIAVVRRENGHRLRIFPVTGHS*LGSVL 234
           H  VVR +NG  + +    G   LG+++
Sbjct: 320 HSGVVRGDNGQNIPLTEFEGIDVLGNII 347


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 116 SFTTIRTNEEDLTSPSS 166
           +FT +  ++ DL SPSS
Sbjct: 260 AFTLVDASQHDLGSPSS 276


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 562 LIFYTRETQVFFIFD 518
           +IFY +E  V F+FD
Sbjct: 73  VIFYCQEGSVDFLFD 87


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 562 LIFYTRETQVFFIFD 518
           +IFY +E  V F+FD
Sbjct: 306 VIFYCQEGSVDFLFD 320


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 562 LIFYTRETQVFFIFD 518
           +IFY +E  V F+FD
Sbjct: 306 VIFYCQEGSVDFLFD 320


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 503 SVSNLGNFHRDWTGPLRGVS 444
           S+S  G F   W  PL+G S
Sbjct: 203 SISPSGGFLPKWLPPLQGFS 222


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,181
Number of Sequences: 336
Number of extensions: 2922
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)